Rmu_sc0003260.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003260.1
OG0000863
Physical Location & Seq
Forward (+)
75736 .. 76909
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003260.1_g000011.1.cds

Sequence Viewer

Length: 528 bp
atgaaaacatatgccaccacggcacttgagatagcgatgtgtgacctcatggagacacgcgcacaagctgaaacggagggcgcggcagctcgccgagagattgagaacatgacaaactccaggcagcaccagcacaggaccacaaccctagcggcgtcggcattcaagcaggccctccagccgggatacttcctactacaaatcaacaccaatccccctgcgacatacgatgacctcctcgaagccgccaccgctttcgcgcaggccgagtatgacacctttggtcgcgatgtcagtaccagtacacacccaatcaacgtaccccaactcaacaaccccatcggaacgaccgacaacaagaacaaagacaccaacagagacaagcctgttccacacaatgatagaaccacaagagagcgaccaagttacaacgataaaagggacaaacagtacgggaagagccccgagaagccaacgtacaactcatcaggcagtcgatattacaatgtgccatatggcggtacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.64

Weight (kDa)

6.91

Isoelectric Point (pI)

44.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 521
AccB1I GGYRCC 1 cut(s) 521
AccII CGCG 4 cut(s) 60, 83, 260, 288
AciI CCGC 5 cut(s) 83, 152, 246, 252, 519
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 6 cut(s) 298, 304, 321, 452, 479, 523
AfiI CCNNNNNNNGG 2 cut(s) 181, 518
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 68, 89
AluI AGCT 2 cut(s) 68, 89
Alw26I GTCTC 2 cut(s) 47, 372
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 2 cut(s) 171, 264
ApeKI GCWGC 2 cut(s) 86, 124
Asp718I GGTACC 1 cut(s) 521
AspLEI GCGC 3 cut(s) 62, 83, 262
AspS9I GGNCC 2 cut(s) 138, 172
AsuC2I CCSGG 1 cut(s) 183
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 521
BanII GRGCYC 1 cut(s) 464
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
BbvI GCAGC 2 cut(s) 98, 136
BccI CCATC 1 cut(s) 347
BceAI ACGGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 121
BciVI GTATCC 1 cut(s) 179
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 47, 372
BfaI CTAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 20
BisI GCNGC 5 cut(s) 84, 87, 125, 153, 246
BlsI GCNGC 5 cut(s) 85, 88, 126, 154, 247
Bme1390I CCNGG 2 cut(s) 121, 183
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 2 cut(s) 138, 172
BmiI GGNNCC 1 cut(s) 523
BmrFI CCNGG 2 cut(s) 121, 183
BpmI CTGGAG 2 cut(s) 103, 161
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 518
Bse1I ACTGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 181, 518
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 98, 136
Bsh1236I CGCG 4 cut(s) 60, 83, 260, 288
Bsh1285I CGRYCG 1 cut(s) 351
BshFI GGCC 2 cut(s) 173, 266
BshNI GGYRCC 1 cut(s) 521
BsiEI CGRYCG 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 1 cut(s) 182
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 2 cut(s) 181, 518
BsmAI GTCTC 2 cut(s) 47, 372
BsmFI GGGAC 1 cut(s) 455
BsmI GAATGC 1 cut(s) 161
BsnI GGCC 2 cut(s) 173, 266
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 464
Bsp68I TCGCGA 1 cut(s) 288
BspACI CCGC 5 cut(s) 83, 152, 246, 252, 519
BspANI GGCC 2 cut(s) 173, 266
BspFNI CGCG 4 cut(s) 60, 83, 260, 288
BspLI GGNNCC 1 cut(s) 523
BspQI GCTCTTC 1 cut(s) 452
BspT107I GGYRCC 1 cut(s) 521
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 18
BssNI GRCGYC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 452
BstACI GRCGYC 1 cut(s) 155
BstC8I GCNNGC 3 cut(s) 91, 171, 264
BstDSI CCRYGG 1 cut(s) 18
BstFNI CGCG 4 cut(s) 60, 83, 260, 288
BstHHI GCGC 3 cut(s) 62, 83, 262
BstMAI GTCTC 2 cut(s) 47, 372
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 4 cut(s) 20, 130, 158, 251
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 119, 181
BstUI CGCG 4 cut(s) 60, 83, 260, 288
BstV1I GCAGC 2 cut(s) 98, 136
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 2 cut(s) 173, 266
BtgI CCRYGG 1 cut(s) 18
BtgZI GCGATG 2 cut(s) 50, 303
BtuMI TCGCGA 1 cut(s) 288
Cac8I GCNNGC 3 cut(s) 91, 171, 264
CfoI GCGC 3 cut(s) 62, 83, 262
Cfr13I GGNCC 2 cut(s) 138, 172
CseI GACGC 1 cut(s) 144
Csp6I GTAC 6 cut(s) 297, 303, 320, 451, 478, 522
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 2 cut(s) 49, 109
CviJI RGCY 9 cut(s) 68, 89, 173, 181, 245, 266, 385, 462, 472
CviKI_1 RGCY 9 cut(s) 68, 89, 173, 181, 245, 266, 385, 462, 472
CviQI GTAC 6 cut(s) 297, 303, 320, 451, 478, 522
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 464
FaeI CATG 2 cut(s) 52, 112
FaiI YATR 8 cut(s) 10, 12, 50, 110, 226, 273, 514, 516
FaqI GGGAC 1 cut(s) 455
FatI CATG 2 cut(s) 48, 108
FauNDI CATATG 2 cut(s) 10, 514
Fnu4HI GCNGC 5 cut(s) 84, 87, 125, 153, 246
FriOI GRGCYC 1 cut(s) 464
Fsp4HI GCNGC 5 cut(s) 84, 87, 125, 153, 246
FspBI CTAG 1 cut(s) 149
GlaI GCGC 3 cut(s) 61, 82, 261
GluI GCNGC 5 cut(s) 84, 87, 125, 153, 246
GsuI CTGGAG 2 cut(s) 103, 161
HaeIII GGCC 2 cut(s) 173, 266
HapII CCGG 1 cut(s) 182
HgaI GACGC 1 cut(s) 144
HhaI GCGC 3 cut(s) 62, 83, 262
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 2 cut(s) 52, 112
Hin6I GCGC 3 cut(s) 60, 81, 260
HinP1I GCGC 3 cut(s) 60, 81, 260
HpaII CCGG 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 1 cut(s) 305
Hpy99I CGWCG 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4IV ACGT 2 cut(s) 318, 476
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 130, 158, 251
HpySE526I ACGT 2 cut(s) 318, 476
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 2 cut(s) 52, 112
HspAI GCGC 3 cut(s) 60, 81, 260
KpnI GGTACC 1 cut(s) 525
LguI GCTCTTC 1 cut(s) 452
Lsp1109I GCAGC 2 cut(s) 98, 136
MaeI CTAG 1 cut(s) 149
MaeII ACGT 2 cut(s) 318, 476
MaeIII GTNAC 2 cut(s) 41, 425
MboII GAAGA 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 464
MnlI CCTC 5 cut(s) 56, 70, 185, 245, 248
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 2 cut(s) 121, 183
Mva1269I GAATGC 1 cut(s) 161
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 4 cut(s) 60, 83, 260, 288
MwoI GCNNNNNNNGC 4 cut(s) 20, 130, 158, 251
NciI CCSGG 1 cut(s) 183
NdeI CATATG 2 cut(s) 10, 514
NlaIII CATG 2 cut(s) 52, 112
NlaIV GGNNCC 1 cut(s) 523
NmeAIII GCCGAG 2 cut(s) 119, 292
NmuCI GTSAC 1 cut(s) 41
NruI TCGCGA 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 452
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 348
PctI GAATGC 1 cut(s) 161
PkrI GCNGC 5 cut(s) 85, 88, 126, 154, 247
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 523
PspPI GGNCC 2 cut(s) 138, 172
RruI TCGCGA 1 cut(s) 288
RsaI GTAC 6 cut(s) 298, 304, 321, 452, 479, 523
RsaNI GTAC 6 cut(s) 297, 303, 320, 451, 478, 522
SapI GCTCTTC 1 cut(s) 452
SatI GCNGC 5 cut(s) 84, 87, 125, 153, 246
Sau96I GGNCC 2 cut(s) 138, 172
ScrFI CCNGG 2 cut(s) 121, 183
SduI GDGCHC 1 cut(s) 464
SetI ASST 8 cut(s) 48, 70, 91, 237, 281, 321, 479, 527
SinI GGWCC 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SsiI CCGC 5 cut(s) 83, 152, 246, 252, 519
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 119, 181
TaaI ACNGT 1 cut(s) 450
TaiI ACGT 2 cut(s) 321, 479
TaqI TCGA 2 cut(s) 240, 496
TaqII GACCGA 1 cut(s) 365
TatI WGTACW 1 cut(s) 302
TauI GCSGC 3 cut(s) 86, 155, 248
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 86, 124
Tsp45I GTSAC 1 cut(s) 41
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 138
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.