Rmu_sc0008691.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008691.1
OG0000863
Physical Location & Seq
Forward (+)
22045 .. 22568
524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008691.1_g000004.1.cds

Sequence Viewer

Length: 444 bp
atggctaccaacatccccgataacgacgatccgccccacgaggcaacgaccctagaggtccagcgcactctcgagttccaaagcccaaacgtcgagactcgctcagtcatgaccaccgatccaaccatcgcgctagagatagcgatgcacgacctcatggagacacgtgcacaggccgagcgtgcagcagctatagcagctcgccgagagagcccatcagcaggagaccccgataccaactatcggtggtgtcctgacaccaggagcagtcctcaccaccgacccaagcactggcctcaccacaatgcttggtcgaagtatttcatttctcatgaagatgagattgtaagatctgaggaactgaaggagcatggcaaaatatttgaagaattgaaggaggatgccaaaagaatgcaagaattgattgcaaaatttccagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.94

Weight (kDa)

5.43

Isoelectric Point (pI)

61.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 291
AccII CGCG 1 cut(s) 131
AciI CCGC 1 cut(s) 32
AclWI GGATC 2 cut(s) 23, 113
AcsI RAATTY 1 cut(s) 431
AcuI CTGAAG 1 cut(s) 383
AcvI CACGTG 1 cut(s) 167
AfiI CCNNNNNNNGG 3 cut(s) 221, 243, 291
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 2 cut(s) 386, 394
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 3 cut(s) 191, 200, 440
AluI AGCT 3 cut(s) 191, 200, 440
Alw21I GWGCWC 1 cut(s) 172
Alw26I GTCTC 3 cut(s) 89, 155, 219
Alw44I GTGCAC 1 cut(s) 168
AlwI GGATC 2 cut(s) 23, 113
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 2 cut(s) 174, 293
ApaLI GTGCAC 1 cut(s) 168
ApeKI GCWGC 3 cut(s) 185, 188, 197
ApoI RAATTY 1 cut(s) 431
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 2 cut(s) 66, 133
AspS9I GGNCC 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 266, 290
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 215
BauI CACGAG 1 cut(s) 38
BbrPI CACGTG 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 3 cut(s) 197, 200, 209
BccI CCATC 2 cut(s) 134, 223
BciT130I CCWGG 1 cut(s) 262
BcoDI GTCTC 3 cut(s) 89, 155, 219
BfaI CTAG 2 cut(s) 53, 134
BfmI CTRYAG 1 cut(s) 192
BglII AGATCT 1 cut(s) 350
BisI GCNGC 3 cut(s) 186, 189, 198
BlsI GCNGC 3 cut(s) 187, 190, 199
Bme1390I CCNGG 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 58
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 2 cut(s) 135, 391
BplI GAGNNNNNCTC 4 cut(s) 86, 118, 256, 288
BsaAI YACGTR 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 219
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 243, 291
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 262
BseGI GGATG 2 cut(s) 12, 406
BseLI CCNNNNNNNGG 3 cut(s) 221, 243, 291
BseMII CTCAG 2 cut(s) 117, 345
BseNI ACTGG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 3 cut(s) 197, 200, 209
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 2 cut(s) 176, 295
BsiHKAI GWGCWC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 71
BslI CCNNNNNNNGG 3 cut(s) 221, 243, 291
BsmAI GTCTC 3 cut(s) 89, 155, 219
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 2 cut(s) 176, 295
Bso31I GGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 172, 215
Bsp143I GATC 3 cut(s) 28, 118, 350
BspACI CCGC 1 cut(s) 32
BspANI GGCC 2 cut(s) 176, 295
BspCNI CTCAG 2 cut(s) 116, 346
BspFNI CGCG 1 cut(s) 131
BspHI TCATGA 2 cut(s) 108, 331
BspPI GGATC 2 cut(s) 23, 113
BspTNI GGTCTC 1 cut(s) 219
BsrI ACTGG 1 cut(s) 296
BssMI GATC 3 cut(s) 28, 118, 350
BssSI CACGAG 1 cut(s) 38
Bst2BI CACGAG 1 cut(s) 38
Bst2UI CCWGG 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 167
BstC8I GCNNGC 2 cut(s) 183, 202
BstDEI CTNAG 2 cut(s) 103, 354
BstF5I GGATG 2 cut(s) 12, 406
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 2 cut(s) 66, 133
BstKTI GATC 3 cut(s) 31, 121, 353
BstMAI GTCTC 3 cut(s) 89, 155, 219
BstMBI GATC 3 cut(s) 28, 118, 350
BstMWI GCNNNNNNNGC 4 cut(s) 182, 194, 197, 210
BstNI CCWGG 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 260
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 172
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 3 cut(s) 197, 200, 209
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
BsuRI GGCC 2 cut(s) 176, 295
BtgZI GCGATG 2 cut(s) 112, 158
BtsCI GGATG 2 cut(s) 12, 406
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 183, 202
CciI TCATGA 2 cut(s) 108, 331
CfoI GCGC 2 cut(s) 66, 133
Cfr13I GGNCC 1 cut(s) 58
CspCI CAANNNNNGTGG 2 cut(s) 290, 325
CviAII CATG 4 cut(s) 109, 157, 332, 371
CviJI RGCY 8 cut(s) 5, 84, 176, 191, 200, 213, 295, 440
CviKI_1 RGCY 8 cut(s) 5, 84, 176, 191, 200, 213, 295, 440
DdeI CTNAG 2 cut(s) 103, 354
DpnI GATC 3 cut(s) 30, 120, 352
DpnII GATC 3 cut(s) 28, 118, 350
EciI GGCGGA 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 219
Eco47I GGWCC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 383
Eco72I CACGTG 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 215
FaeI CATG 4 cut(s) 112, 160, 335, 374
FaiI YATR 5 cut(s) 110, 158, 194, 333, 372
FatI CATG 4 cut(s) 108, 156, 331, 370
Fnu4HI GCNGC 3 cut(s) 186, 189, 198
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 3 cut(s) 186, 189, 198
FspBI CTAG 2 cut(s) 53, 134
GlaI GCGC 2 cut(s) 65, 132
GluI GCNGC 3 cut(s) 186, 189, 198
HaeIII GGCC 2 cut(s) 176, 295
HhaI GCGC 2 cut(s) 66, 133
Hin1II CATG 4 cut(s) 112, 160, 335, 374
Hin6I GCGC 2 cut(s) 64, 131
HinP1I GCGC 2 cut(s) 64, 131
HinfI GANTC 1 cut(s) 97
HphI GGTGA 2 cut(s) 266, 290
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 5 cut(s) 71, 94, 109, 254, 332
Hpy8I GTNNAC 1 cut(s) 170
Hpy99I CGWCG 2 cut(s) 29, 95
HpyAV CCTTC 2 cut(s) 358, 388
HpyCH4IV ACGT 2 cut(s) 90, 166
HpyCH4V TGCA 5 cut(s) 148, 170, 185, 415, 428
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 194, 197, 210
HpyF3I CTNAG 2 cut(s) 103, 354
HpySE526I ACGT 2 cut(s) 90, 166
Hsp92II CATG 4 cut(s) 112, 160, 335, 374
HspAI GCGC 2 cut(s) 64, 131
Kzo9I GATC 3 cut(s) 28, 118, 350
LmnI GCTCC 2 cut(s) 264, 367
LpnPI CCDG 7 cut(s) 74, 158, 207, 247, 267, 274, 277
Lsp1109I GCAGC 3 cut(s) 197, 200, 209
LweI GCATC 2 cut(s) 135, 391
MaeI CTAG 2 cut(s) 53, 134
MaeII ACGT 2 cut(s) 90, 166
MalI GATC 3 cut(s) 30, 120, 352
MboI GATC 3 cut(s) 28, 118, 350
MboII GAAGA 2 cut(s) 347, 398
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 2 cut(s) 172, 215
MluCI AATT 3 cut(s) 389, 419, 431
MlyI GAGTC 1 cut(s) 91
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 7 cut(s) 34, 49, 164, 282, 306, 349, 391
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 1 cut(s) 442
MslI CAYNNNNRTG 2 cut(s) 303, 336
MspR9I CCNGG 1 cut(s) 262
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 1 cut(s) 262
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 4 cut(s) 182, 194, 197, 210
NdeII GATC 3 cut(s) 28, 118, 350
NlaIII CATG 4 cut(s) 112, 160, 335, 374
NmeAIII GCCGAG 2 cut(s) 202, 230
PaeR7I CTCGAG 1 cut(s) 71
PagI TCATGA 2 cut(s) 108, 331
PctI GAATGC 1 cut(s) 417
PdmI GAANNNNTTC 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 291
PkrI GCNGC 3 cut(s) 187, 190, 199
PleI GAGTC 1 cut(s) 91
PmaCI CACGTG 1 cut(s) 167
PmlI CACGTG 1 cut(s) 167
PpsI GAGTC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 260
PspCI CACGTG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 260
PspPI GGNCC 1 cut(s) 58
PsuI RGATCY 1 cut(s) 350
RseI CAYNNNNRTG 2 cut(s) 303, 336
SaqAI TTAA 1 cut(s) 442
SatI GCNGC 3 cut(s) 186, 189, 198
Sau3AI GATC 3 cut(s) 28, 118, 350
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 2 cut(s) 172, 215
SetI ASST 7 cut(s) 60, 93, 156, 169, 193, 202, 442
SfaNI GCATC 2 cut(s) 135, 391
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 58
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 303, 336
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
Sse9I AATT 3 cut(s) 389, 419, 431
SsiI CCGC 1 cut(s) 32
SspI AATATT 1 cut(s) 381
SspMI CTAG 2 cut(s) 53, 134
StyD4I CCNGG 1 cut(s) 260
TaiI ACGT 2 cut(s) 93, 169
TaqI TCGA 3 cut(s) 72, 93, 314
TasI AATT 3 cut(s) 389, 419, 431
Tru1I TTAA 1 cut(s) 442
Tru9I TTAA 1 cut(s) 442
TscAI CASTG 1 cut(s) 296
TseI GCWGC 3 cut(s) 185, 188, 197
TspDTI ATGAA 2 cut(s) 313, 348
TspRI CASTG 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 291
VneI GTGCAC 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 58
XapI RAATTY 1 cut(s) 431
XhoI CTCGAG 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 2 cut(s) 53, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.