Rmu_sc0025427.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025427.1
OG0000863
Physical Location & Seq
Reverse (-)
1 .. 555
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025427.1_g000001.1.cds

Sequence Viewer

Length: 364 bp
ctgatattgaccattgatggtgtcccgacactcggagtagtcctcaccaggaacccgagcaccggcctcgcaggcacattcgtaccaccaagagcgaaaacttctagaagcccgaccggccccactctcggcaacaccagtacaggaccacaagtgatttacctaaactcccctcttttctccaatcaactcggcacaacacctccaccactgcccgtacgctatatggcgggagtatcgggcacaaacattgctacaaccgccaatacacctccaaccgaccccaacaaccggttgttactccaaatgagagaaaccatcacctccctgcaggcgcggattgagagtgccgagagcaggtccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.68

Weight (kDa)

10.77

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 348
AccII CGCG 1 cut(s) 337
AciI CCGC 3 cut(s) 230, 261, 337
AfaI GTAC 3 cut(s) 84, 142, 219
AfiI CCNNNNNNNGG 5 cut(s) 32, 62, 128, 291, 357
AgeI ACCGGT 1 cut(s) 291
AjnI CCWGG 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 2 cut(s) 64, 118
AsiGI ACCGGT 1 cut(s) 291
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 3 cut(s) 119, 146, 360
AsuHPI GGTGA 2 cut(s) 37, 313
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 2 cut(s) 146, 360
BaeGI GKGCMC 1 cut(s) 245
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 2 cut(s) 11, 326
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BciT130I CCWGG 1 cut(s) 49
BfaI CTAG 1 cut(s) 105
BfmI CTRYAG 1 cut(s) 329
BfuAI ACCTGC 1 cut(s) 348
BglI GCCNNNNNGGC 2 cut(s) 72, 117
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 2 cut(s) 146, 360
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 3 cut(s) 119, 146, 360
BmiI GGNNCC 2 cut(s) 53, 121
BmrFI CCNGG 1 cut(s) 49
BplI GAGNNNNNCTC 2 cut(s) 27, 59
BsaWI WCCGGW 1 cut(s) 291
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 187, 217
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 62, 128, 291, 357
Bse118I RCCGGY 3 cut(s) 62, 116, 291
Bse1I ACTGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 1 cut(s) 49
BseLI CCNNNNNNNGG 5 cut(s) 32, 62, 128, 291, 357
BseMI GCAATG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 337
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 2 cut(s) 66, 120
BshTI ACCGGT 1 cut(s) 291
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 3 cut(s) 63, 117, 292
BsiWI CGTACG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 5 cut(s) 32, 62, 128, 291, 357
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 2 cut(s) 66, 120
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 2 cut(s) 62, 245
BspACI CCGC 3 cut(s) 230, 261, 337
BspANI GGCC 2 cut(s) 66, 120
BspFNI CGCG 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 53, 121
BspMAI CTGCAG 1 cut(s) 333
BspMI ACCTGC 1 cut(s) 348
BsrDI GCAATG 1 cut(s) 249
BsrFI RCCGGY 3 cut(s) 62, 116, 291
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 3 cut(s) 62, 116, 291
Bst2UI CCWGG 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 73, 333
BstFNI CGCG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 337
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 3 cut(s) 72, 117, 260
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstSFI CTRYAG 1 cut(s) 329
BstSLI GKGCMC 1 cut(s) 245
BstUI CGCG 1 cut(s) 337
BsuRI GGCC 2 cut(s) 66, 120
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 73, 333
CfoI GCGC 1 cut(s) 337
Cfr10I RCCGGY 3 cut(s) 62, 116, 291
Cfr13I GGNCC 3 cut(s) 119, 146, 360
Csp6I GTAC 3 cut(s) 83, 141, 218
CspAI ACCGGT 1 cut(s) 291
CviJI RGCY 3 cut(s) 66, 111, 120
CviKI_1 RGCY 3 cut(s) 66, 111, 120
CviQI GTAC 3 cut(s) 83, 141, 218
Eco47I GGWCC 2 cut(s) 146, 360
Eco88I CYCGRG 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 47
FaiI YATR 2 cut(s) 225, 227
FaqI GGGAC 1 cut(s) 8
FauI CCCGC 1 cut(s) 223
FspBI CTAG 1 cut(s) 105
GlaI GCGC 1 cut(s) 336
HaeIII GGCC 2 cut(s) 66, 120
HapII CCGG 3 cut(s) 63, 117, 292
HhaI GCGC 1 cut(s) 337
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HpaII CCGG 3 cut(s) 63, 117, 292
HphI GGTGA 2 cut(s) 37, 313
Hpy188I TCNGA 1 cut(s) 35
Hpy188III TCNNGA 2 cut(s) 25, 105
HpyCH4V TGCA 1 cut(s) 331
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 117, 260
HspAI GCGC 1 cut(s) 335
MaeI CTAG 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 297
MhlI GDGCHC 2 cut(s) 62, 245
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 6 cut(s) 53, 77, 183, 213, 282, 334
MspI CCGG 3 cut(s) 63, 117, 292
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 3 cut(s) 72, 117, 260
NlaIV GGNNCC 2 cut(s) 53, 121
NmeAIII GCCGAG 2 cut(s) 108, 171
Pfl23II CGTACG 1 cut(s) 217
PinAI ACCGGT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspLI CGTACG 1 cut(s) 217
PspN4I GGNNCC 2 cut(s) 53, 121
PspPI GGNCC 3 cut(s) 119, 146, 360
PstI CTGCAG 1 cut(s) 333
RsaI GTAC 3 cut(s) 84, 142, 219
RsaNI GTAC 3 cut(s) 83, 141, 218
Sau96I GGNCC 3 cut(s) 119, 146, 360
SbfI CCTGCAGG 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 49
SdaI CCTGCAGG 1 cut(s) 333
SduI GDGCHC 2 cut(s) 62, 245
SetI ASST 5 cut(s) 165, 205, 274, 326, 362
SfcI CTRYAG 1 cut(s) 329
SinI GGWCC 2 cut(s) 146, 360
Sse8387I CCTGCAGG 1 cut(s) 333
SsiI CCGC 3 cut(s) 230, 261, 337
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 47
TatI WGTACW 1 cut(s) 140
TscAI CASTG 1 cut(s) 216
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 2 cut(s) 146, 360
XbaI TCTAGA 1 cut(s) 104
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.