Rmu_co8353833.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8353833.1
OG0000863
Physical Location & Seq
Forward (+)
1 .. 1053
1053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8353833.1_g000001.1.cds

Sequence Viewer

Length: 533 bp
agcccgaacactgagacacgctcggtcataaccactgatgctaccaccgcactgaaaatagcgatgcgtgacctaatggagacacgtgcacaggtcaaggccgagcacgcgataattggtggtgtcccaacacccggagcagtcctcaccatagacctaagcactgagctcgctggcacttttgtgctaccaatcggaacctctagaatccccacagcccccactccaggcagcaccagcactggaccacaagtgatttacctgaactcccctcttctctccaaccagctcggcacagcggcaccacctcagcctatcccagatatagcgaggaccgtaggagcaaatacggtcgcaactgccaatatacctctacccgaccctaacacttggctgttgcttctaataagcgaaaccatcgcctccttgcaagcaagaattgagagcgctgaaagcaggacaggctggcaacagatcacggctggcttccagggaaagatgggaccattcactcccctgatacaggctgagaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

18.46

Weight (kDa)

5.11

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 301
AccII CGCG 1 cut(s) 110
AciI CCGC 2 cut(s) 48, 299
AcvI CACGTG 1 cut(s) 86
AfeI AGCGCT 1 cut(s) 448
AfiI CCNNNNNNNGG 3 cut(s) 134, 227, 523
AflIII ACRYGT 1 cut(s) 83
AjnI CCWGG 2 cut(s) 226, 489
AleI CACNNNNGTG 1 cut(s) 182
AluBI AGCT 2 cut(s) 169, 289
AluI AGCT 2 cut(s) 169, 289
Alw21I GWGCWC 3 cut(s) 91, 108, 171
Alw26I GTCTC 2 cut(s) 8, 74
Alw44I GTGCAC 1 cut(s) 87
Aor51HI AGCGCT 1 cut(s) 448
AoxI GGCC 1 cut(s) 99
ApaLI GTGCAC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 449
AspS9I GGNCC 3 cut(s) 245, 333, 503
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 3 cut(s) 245, 333, 503
BaeGI GKGCMC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 1 cut(s) 171
BbrPI CACGTG 1 cut(s) 86
Bbv12I GWGCWC 3 cut(s) 91, 108, 171
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 243
BccI CCATC 2 cut(s) 425, 493
BceAI ACGGC 1 cut(s) 495
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BciT130I CCWGG 2 cut(s) 228, 491
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 8, 74
BfaI CTAG 1 cut(s) 204
BfoI RGCGCY 1 cut(s) 450
BisI GCNGC 2 cut(s) 232, 300
BlsI GCNGC 2 cut(s) 233, 301
Bme1390I CCNGG 3 cut(s) 135, 228, 491
Bme18I GGWCC 3 cut(s) 245, 333, 503
BmgT120I GGNCC 3 cut(s) 245, 333, 503
BmiI GGNNCC 3 cut(s) 199, 303, 504
BmrFI CCNGG 3 cut(s) 135, 228, 491
BmsI GCATC 2 cut(s) 28, 54
BplI GAGNNNNNCTC 3 cut(s) 37, 129, 161
BpmI CTGGAG 1 cut(s) 210
Bpu10I CCTNAGC 2 cut(s) 158, 309
BpuMI CCSGG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 490
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 3 cut(s) 134, 227, 523
Bse1I ACTGG 1 cut(s) 247
BseBI CCWGG 2 cut(s) 228, 491
BseDI CCNNGG 1 cut(s) 490
BseLI CCNNNNNNNGG 3 cut(s) 134, 227, 523
BseMII CTCAG 3 cut(s) 156, 323, 519
BseNI ACTGG 1 cut(s) 247
BseSI GKGCMC 1 cut(s) 91
BseXI GCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 354
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 301
BsiEI CGRYCG 1 cut(s) 354
BsiHKAI GWGCWC 3 cut(s) 91, 108, 171
BsiSI CCGG 1 cut(s) 135
BslFI GGGAC 2 cut(s) 110, 516
BslI CCNNNNNNNGG 3 cut(s) 134, 227, 523
BsmAI GTCTC 2 cut(s) 8, 74
BsmFI GGGAC 2 cut(s) 110, 516
BsnI GGCC 1 cut(s) 101
Bsp1286I GDGCHC 3 cut(s) 91, 108, 171
Bsp143I GATC 1 cut(s) 474
BspACI CCGC 2 cut(s) 48, 299
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 4 cut(s) 4, 157, 322, 520
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 199, 303, 504
BspT107I GGYRCC 1 cut(s) 301
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 228, 491
Bst4CI ACNGT 2 cut(s) 337, 352
Bst6I CTCTTC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 6 cut(s) 108, 171, 175, 432, 467, 484
BstDEI CTNAG 5 cut(s) 12, 158, 165, 309, 528
BstENI CCTNNNNNAGG 1 cut(s) 521
BstFNI CGCG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 450
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 1 cut(s) 477
BstMAI GTCTC 2 cut(s) 8, 74
BstMBI GATC 1 cut(s) 474
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 5 cut(s) 47, 107, 237, 453, 462
BstNI CCWGG 2 cut(s) 228, 491
BstSCI CCNGG 3 cut(s) 133, 226, 489
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 101
BtgZI GCGATG 2 cut(s) 77, 403
BtsIMutI CAGTG 5 cut(s) 9, 33, 50, 162, 240
Cac8I GCNNGC 6 cut(s) 108, 171, 175, 432, 467, 484
CfoI GCGC 1 cut(s) 449
Cfr13I GGNCC 3 cut(s) 245, 333, 503
DdeI CTNAG 5 cut(s) 12, 158, 165, 309, 528
DpnI GATC 1 cut(s) 476
DpnII GATC 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 3 cut(s) 245, 333, 503
Eco47III AGCGCT 1 cut(s) 448
Eco53kI GAGCTC 1 cut(s) 169
Eco72I CACGTG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 226, 489
EcoT38I GRGCYC 1 cut(s) 171
FaiI YATR 4 cut(s) 29, 152, 326, 368
FaqI GGGAC 2 cut(s) 110, 516
Fnu4HI GCNGC 2 cut(s) 232, 300
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 232, 300
FspBI CTAG 1 cut(s) 204
GlaI GCGC 1 cut(s) 448
GluI GCNGC 2 cut(s) 232, 300
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 450
HaeIII GGCC 1 cut(s) 101
HapII CCGG 1 cut(s) 135
HhaI GCGC 1 cut(s) 449
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HinfI GANTC 1 cut(s) 207
HpaII CCGG 1 cut(s) 135
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 1 cut(s) 204
Hpy8I GTNNAC 1 cut(s) 89
HpyCH4III ACNGT 2 cut(s) 337, 352
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 89, 430
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 107, 237, 453, 462
HpyF3I CTNAG 5 cut(s) 12, 158, 165, 309, 528
HpySE526I ACGT 1 cut(s) 85
HspAI GCGC 1 cut(s) 447
Kzo9I GATC 1 cut(s) 474
LmnI GCTCC 2 cut(s) 137, 341
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 2 cut(s) 28, 54
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 476
MboI GATC 1 cut(s) 474
MboII GAAGA 1 cut(s) 266
MhlI GDGCHC 3 cut(s) 91, 108, 171
MluCI AATT 2 cut(s) 114, 438
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 7 cut(s) 155, 211, 282, 318, 324, 381, 433
MslI CAYNNNNRTG 1 cut(s) 182
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 135
MspR9I CCNGG 3 cut(s) 135, 228, 491
MvaI CCWGG 2 cut(s) 228, 491
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 5 cut(s) 47, 107, 237, 453, 462
NciI CCSGG 1 cut(s) 135
NdeII GATC 1 cut(s) 474
NlaIV GGNNCC 3 cut(s) 199, 303, 504
NmeAIII GCCGAG 2 cut(s) 127, 270
NmuCI GTSAC 1 cut(s) 68
OliI CACNNNNGTG 1 cut(s) 182
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 2 cut(s) 233, 301
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 2 cut(s) 226, 489
PspCI CACGTG 1 cut(s) 86
PspGI CCWGG 2 cut(s) 226, 489
PspN4I GGNNCC 3 cut(s) 199, 303, 504
PspPI GGNCC 3 cut(s) 245, 333, 503
RseI CAYNNNNRTG 1 cut(s) 182
SacI GAGCTC 1 cut(s) 171
SatI GCNGC 2 cut(s) 232, 300
Sau3AI GATC 1 cut(s) 474
Sau96I GGNCC 3 cut(s) 245, 333, 503
ScrFI CCNGG 3 cut(s) 135, 228, 491
SduI GDGCHC 3 cut(s) 91, 108, 171
SfaNI GCATC 2 cut(s) 28, 54
SinI GGWCC 3 cut(s) 245, 333, 503
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 2 cut(s) 114, 438
SsiI CCGC 2 cut(s) 48, 299
SspMI CTAG 1 cut(s) 204
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 3 cut(s) 133, 226, 489
TaaI ACNGT 2 cut(s) 337, 352
TaiI ACGT 1 cut(s) 88
TaqII GACCGA 1 cut(s) 13
TasI AATT 2 cut(s) 114, 438
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 1 cut(s) 207
TscAI CASTG 5 cut(s) 16, 40, 57, 169, 247
TseFI GTSAC 1 cut(s) 68
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 68
TspRI CASTG 5 cut(s) 16, 40, 57, 169, 247
VneI GTGCAC 1 cut(s) 87
VpaK11BI GGWCC 3 cut(s) 245, 333, 503
XagI CCTNNNNNAGG 1 cut(s) 521
XbaI TCTAGA 1 cut(s) 203
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.