Rmu_sc0013612.1_g000011

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013612.1
OG0000863
Physical Location & Seq
Forward (+)
39890 .. 40267
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013612.1_g000011.1.cds

Sequence Viewer

Length: 378 bp
atgacacacgggccctacaccaagcagcaccagtaccggaccacaagtcatctacttgaatcccccatactcctcagtcaacttggcacagcgccaccacctcagcccgtcccatatatagtgggaaccttatgtgcaaacaccgccacagccgccaacgtagctccacccgaccccaatactcggctattgctccaaatgagccaagccatcgcctccttacaagcacgggtagagagcgccaaacgtaggacaggctggcaaccgatcactgcaggctttcaggaaaacatgggaccattcactgcccgaatacaggctgagaagcgcccacgggaggccaagcccttcaagattgagaaatataacggcacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

125

Amino Acids

13.76

Weight (kDa)

10.0

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 144, 153
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 4 cut(s) 183, 249, 316, 337
AgsI TTSAA 2 cut(s) 59, 352
AhdI GACNNNNNGTC 1 cut(s) 45
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
AoxI GGCC 2 cut(s) 11, 339
ApaI GGGCCC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 3 cut(s) 94, 242, 330
AspS9I GGNCC 4 cut(s) 11, 12, 39, 296
AvaII GGWCC 2 cut(s) 39, 296
BaeGI GKGCMC 1 cut(s) 15
BanII GRGCYC 1 cut(s) 15
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 3 cut(s) 95, 243, 331
BisI GCNGC 2 cut(s) 26, 153
BlsI GCNGC 2 cut(s) 27, 154
Bme18I GGWCC 2 cut(s) 39, 296
BmeRI GACNNNNNGTC 1 cut(s) 45
BmgT120I GGNCC 4 cut(s) 11, 12, 39, 296
BmiI GGNNCC 3 cut(s) 13, 127, 297
Bpu10I CCTNAGC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 332
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 4 cut(s) 183, 249, 316, 337
Bse1I ACTGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 332
BseLI CCNNNNNNNGG 4 cut(s) 183, 249, 316, 337
BseMII CTCAG 3 cut(s) 88, 116, 312
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 15
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 2 cut(s) 13, 341
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 2 cut(s) 95, 309
BslI CCNNNNNNNGG 4 cut(s) 183, 249, 316, 337
BsmFI GGGAC 2 cut(s) 95, 309
BsnI GGCC 2 cut(s) 13, 341
Bsp120I GGGCCC 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 267
BspACI CCGC 2 cut(s) 144, 153
BspANI GGCC 2 cut(s) 13, 341
BspCNI CTCAG 3 cut(s) 87, 115, 313
BspLI GGNNCC 3 cut(s) 13, 127, 297
BspMAI CTGCAG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 332
BssMI GATC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 260, 277
BstDEI CTNAG 3 cut(s) 74, 102, 321
BstDSI CCRYGG 1 cut(s) 332
BstH2I RGCGCY 3 cut(s) 95, 243, 331
BstHHI GCGC 3 cut(s) 94, 242, 330
BstKTI GATC 1 cut(s) 270
BstMBI GATC 1 cut(s) 267
BstMWI GCNNNNNNNGC 3 cut(s) 143, 152, 161
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 13, 341
BtgI CCRYGG 1 cut(s) 332
BtgZI GCGATG 1 cut(s) 196
BtsI GCAGTG 2 cut(s) 270, 303
BtsIMutI CAGTG 2 cut(s) 270, 303
Cac8I GCNNGC 2 cut(s) 260, 277
CfoI GCGC 3 cut(s) 94, 242, 330
Cfr13I GGNCC 4 cut(s) 11, 12, 39, 296
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 292
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 3 cut(s) 74, 102, 321
DpnI GATC 1 cut(s) 269
DpnII GATC 1 cut(s) 267
DriI GACNNNNNGTC 1 cut(s) 45
Eam1105I GACNNNNNGTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 2 cut(s) 39, 296
EcoO109I RGGNCCY 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 1 cut(s) 295
FaiI YATR 7 cut(s) 68, 115, 117, 119, 133, 293, 366
FaqI GGGAC 2 cut(s) 95, 309
FatI CATG 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 26, 153
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 2 cut(s) 26, 153
GlaI GCGC 3 cut(s) 93, 241, 329
GluI GCNGC 2 cut(s) 26, 153
HaeII RGCGCY 3 cut(s) 95, 243, 331
HaeIII GGCC 2 cut(s) 13, 341
HapII CCGG 1 cut(s) 37
HhaI GCGC 3 cut(s) 94, 242, 330
Hin1II CATG 1 cut(s) 295
Hin6I GCGC 3 cut(s) 92, 240, 328
HinP1I GCGC 3 cut(s) 92, 240, 328
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 80
Hpy188III TCNNGA 2 cut(s) 284, 352
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 358
HpyCH4IV ACGT 2 cut(s) 159, 247
HpyCH4V TGCA 2 cut(s) 137, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 152, 161
HpyF3I CTNAG 3 cut(s) 74, 102, 321
HpySE526I ACGT 2 cut(s) 159, 247
Hsp92II CATG 1 cut(s) 295
HspAI GCGC 3 cut(s) 92, 240, 328
Kzo9I GATC 1 cut(s) 267
LmnI GCTCC 2 cut(s) 169, 198
LpnPI CCDG 7 cut(s) 44, 50, 240, 244, 261, 269, 302
Lsp1109I GCAGC 1 cut(s) 37
MaeII ACGT 2 cut(s) 159, 247
MalI GATC 1 cut(s) 269
MboI GATC 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 15
MnlI CCTC 4 cut(s) 83, 111, 226, 331
MspI CCGG 1 cut(s) 37
MwoI GCNNNNNNNGC 3 cut(s) 143, 152, 161
NdeII GATC 1 cut(s) 267
NlaIII CATG 1 cut(s) 295
NlaIV GGNNCC 3 cut(s) 13, 127, 297
NmeAIII GCCGAG 1 cut(s) 163
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 2 cut(s) 27, 154
PspN4I GGNNCC 3 cut(s) 13, 127, 297
PspOMI GGGCCC 1 cut(s) 11
PspPI GGNCC 4 cut(s) 11, 12, 39, 296
PstI CTGCAG 1 cut(s) 277
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SatI GCNGC 2 cut(s) 26, 153
Sau3AI GATC 1 cut(s) 267
Sau96I GGNCC 4 cut(s) 11, 12, 39, 296
SduI GDGCHC 1 cut(s) 15
SetI ASST 5 cut(s) 103, 131, 162, 166, 250
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 2 cut(s) 39, 296
SsiI CCGC 2 cut(s) 144, 153
TaiI ACGT 2 cut(s) 162, 250
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 59
TscAI CASTG 2 cut(s) 277, 310
TseI GCWGC 1 cut(s) 25
TspRI CASTG 2 cut(s) 277, 310
VpaK11BI GGWCC 2 cut(s) 39, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.