Rmu_sc0002482.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002482.1
OG0000863
Physical Location & Seq
Forward (+)
65504 .. 65872
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002482.1_g000017.1.cds

Sequence Viewer

Length: 369 bp
atggacccaggcactggtctcgtcggtacctttgtgccatcaagcgccacatcgggaagccccacgggccccacacctggcagcacgagtacaagacctcaagtcatctacttgcattcacccctactccccaatcaactcggcacagcgccaccacctcatcttgtccatgatatagcgggaacctcgggcgcaaacgccaccacagccgccaacgtacctccacccgaccacaatgcacggctcttgctccaaatgaacgaagccatcgcctccttacaagcacgagttgaaaacgctgaaagcaggaccggctggcaactaattacggcaggctttcagggaaagacgggaccattcactgcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

12.43

Weight (kDa)

6.38

Isoelectric Point (pI)

40.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 26
AccB7I CCANNNNNTGG 1 cut(s) 14
AciI CCGC 2 cut(s) 179, 210
AfaI GTAC 3 cut(s) 28, 91, 219
AfiI CCNNNNNNNGG 2 cut(s) 14, 77
AgsI TTSAA 1 cut(s) 293
AhdI GACNNNNNGTC 1 cut(s) 101
AjnI CCWGG 2 cut(s) 7, 76
Alw26I GTCTC 1 cut(s) 23
AlwNI CAGNNNCTG 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 187
AoxI GGCC 1 cut(s) 67
ApaI GGGCCC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 81
Asp718I GGTACC 1 cut(s) 26
AspLEI GCGC 3 cut(s) 47, 151, 194
AspS9I GGNCC 5 cut(s) 4, 67, 68, 309, 353
AsuHPI GGTGA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 187
AvaII GGWCC 3 cut(s) 4, 309, 353
BaeGI GKGCMC 1 cut(s) 71
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 71
BauI CACGAG 2 cut(s) 85, 285
BbvI GCAGC 1 cut(s) 93
BccI CCATC 2 cut(s) 46, 275
BceAI ACGGC 2 cut(s) 257, 345
BcgI CGANNNNNNTGC 3 cut(s) 35, 218, 252
BciT130I CCWGG 2 cut(s) 9, 78
BcoDI GTCTC 1 cut(s) 23
BfoI RGCGCY 2 cut(s) 48, 152
BglI GCCNNNNNGGC 1 cut(s) 66
BisI GCNGC 2 cut(s) 82, 210
BlsI GCNGC 2 cut(s) 83, 211
Bme1390I CCNGG 2 cut(s) 9, 78
Bme18I GGWCC 3 cut(s) 4, 309, 353
BmeRI GACNNNNNGTC 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 187
BmgT120I GGNCC 5 cut(s) 4, 67, 68, 309, 353
BmiI GGNNCC 6 cut(s) 6, 28, 69, 70, 184, 354
BmrFI CCNGG 2 cut(s) 9, 78
BpuEI CTTGAG 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 7, 63, 186
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 77
Bse118I RCCGGY 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 2 cut(s) 9, 78
BseDI CCNNGG 3 cut(s) 7, 63, 186
BseLI CCNNNNNNNGG 2 cut(s) 14, 77
BseNI ACTGG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 1 cut(s) 93
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 187
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 14, 77
BsmAI GTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 115
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 187
Bsp120I GGGCCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 71
BspACI CCGC 2 cut(s) 179, 210
BspANI GGCC 1 cut(s) 69
BspLI GGNNCC 6 cut(s) 6, 28, 69, 70, 184, 354
BspT107I GGYRCC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 311
BsrI ACTGG 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 311
BssECI CCNNGG 3 cut(s) 7, 63, 186
BssSI CACGAG 2 cut(s) 85, 285
Bst2BI CACGAG 2 cut(s) 85, 285
Bst2UI CCWGG 2 cut(s) 9, 78
BstC8I GCNNGC 2 cut(s) 317, 334
BstDSI CCRYGG 1 cut(s) 63
BstH2I RGCGCY 2 cut(s) 48, 152
BstHHI GCGC 3 cut(s) 47, 151, 194
BstMAI GTCTC 1 cut(s) 23
BstMWI GCNNNNNNNGC 3 cut(s) 66, 206, 312
BstNI CCWGG 2 cut(s) 9, 78
BstSCI CCNGG 2 cut(s) 7, 76
BstSLI GKGCMC 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 93
BsuRI GGCC 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 12, 360
Cac8I GCNNGC 2 cut(s) 317, 334
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 3 cut(s) 47, 151, 194
Cfr10I RCCGGY 1 cut(s) 311
Cfr13I GGNCC 5 cut(s) 4, 67, 68, 309, 353
Csp6I GTAC 3 cut(s) 27, 90, 218
CviAII CATG 1 cut(s) 170
CviJI RGCY 7 cut(s) 60, 69, 209, 244, 266, 315, 336
CviKI_1 RGCY 7 cut(s) 60, 69, 209, 244, 266, 315, 336
CviQI GTAC 3 cut(s) 27, 90, 218
DriI GACNNNNNGTC 1 cut(s) 101
Eam1105I GACNNNNNGTC 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 3 cut(s) 4, 309, 353
Eco88I CYCGRG 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 7, 76
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 1 cut(s) 173
FaiI YATR 2 cut(s) 171, 176
FatI CATG 1 cut(s) 169
FauI CCCGC 1 cut(s) 172
Fnu4HI GCNGC 2 cut(s) 82, 210
FriOI GRGCYC 1 cut(s) 71
Fsp4HI GCNGC 2 cut(s) 82, 210
GlaI GCGC 3 cut(s) 46, 150, 193
GluI GCNGC 2 cut(s) 82, 210
HaeII RGCGCY 2 cut(s) 48, 152
HaeIII GGCC 1 cut(s) 69
HapII CCGG 1 cut(s) 312
HhaI GCGC 3 cut(s) 47, 151, 194
Hin1II CATG 1 cut(s) 173
Hin6I GCGC 3 cut(s) 45, 149, 192
HinP1I GCGC 3 cut(s) 45, 149, 192
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 115, 239
HpyF10VI GCNNNNNNNGC 3 cut(s) 66, 206, 312
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 173
HspAI GCGC 3 cut(s) 45, 149, 192
KpnI GGTACC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 8 cut(s) 21, 63, 90, 292, 301, 318, 325, 326
Lsp1109I GCAGC 1 cut(s) 93
MaeII ACGT 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 1 cut(s) 324
MnlI CCTC 5 cut(s) 108, 168, 196, 231, 283
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 2 cut(s) 9, 78
Mva1269I GAATGC 1 cut(s) 115
MvaI CCWGG 2 cut(s) 9, 78
MwoI GCNNNNNNNGC 3 cut(s) 66, 206, 312
NlaIII CATG 1 cut(s) 173
NlaIV GGNNCC 6 cut(s) 6, 28, 69, 70, 184, 354
NmeAIII GCCGAG 1 cut(s) 120
PctI GAATGC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 14
PkrI GCNGC 2 cut(s) 83, 211
Psp6I CCWGG 2 cut(s) 7, 76
PspGI CCWGG 2 cut(s) 7, 76
PspN4I GGNNCC 6 cut(s) 6, 28, 69, 70, 184, 354
PspOMI GGGCCC 1 cut(s) 67
PspPI GGNCC 5 cut(s) 4, 67, 68, 309, 353
PstNI CAGNNNCTG 1 cut(s) 14
RsaI GTAC 3 cut(s) 28, 91, 219
RsaNI GTAC 3 cut(s) 27, 90, 218
SatI GCNGC 2 cut(s) 82, 210
Sau96I GGNCC 5 cut(s) 4, 67, 68, 309, 353
ScrFI CCNGG 2 cut(s) 9, 78
SduI GDGCHC 1 cut(s) 71
SetI ASST 7 cut(s) 32, 79, 100, 160, 188, 219, 223
SinI GGWCC 3 cut(s) 4, 309, 353
SmlI CTYRAG 1 cut(s) 99
SmoI CTYRAG 1 cut(s) 99
Sse9I AATT 1 cut(s) 324
SsiI CCGC 2 cut(s) 179, 210
StyD4I CCNGG 2 cut(s) 7, 76
TaiI ACGT 1 cut(s) 219
TasI AATT 1 cut(s) 324
TatI WGTACW 1 cut(s) 89
TauI GCSGC 1 cut(s) 212
TscAI CASTG 2 cut(s) 19, 367
TseI GCWGC 1 cut(s) 81
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 2 cut(s) 19, 367
Van91I CCANNNNNTGG 1 cut(s) 14
VpaK11BI GGWCC 3 cut(s) 4, 309, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.