Rmu_co8307317.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8307317.1
OG0000863
Physical Location & Seq
Reverse (-)
2 .. 707
706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8307317.1_g000001.1.cds

Sequence Viewer

Length: 413 bp
atggctaccagcactctcgataccaatagtgatgactcatcccacgaggcaataacctgtgaggtccagcgcaagctcaaattccagagcccgaacaccgaggcacgttctgtcatgaccactgatgcgaccaccgagatcccgataccaaccattggtggggtcccgacacccggagcagtcctcattacggacccaagcactggtctcactggaacttttggagcatcaggcacaaatgctgctgcaacagccaatatacccacaccggatcccaacacccgattgttactaaagatgagtgaaaccatctcctccttgcaggcgcggattgagagcgccgagagcagaaccggctggcaatcgatcacggctagcttccagggaaagatgggaccattcactcactggat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.4

Weight (kDa)

5.0

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 155, 203
AccII CGCG 1 cut(s) 328
AciI CCGC 1 cut(s) 328
AclWI GGATC 3 cut(s) 133, 266, 279
AcsI RAATTY 1 cut(s) 80
AfiI CCNNNNNNNGG 5 cut(s) 155, 159, 173, 190, 203
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 2 cut(s) 76, 378
AluI AGCT 2 cut(s) 76, 378
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 3 cut(s) 133, 266, 279
ApeKI GCWGC 2 cut(s) 242, 245
ApoI RAATTY 1 cut(s) 80
AspLEI GCGC 3 cut(s) 72, 328, 341
AspS9I GGNCC 4 cut(s) 64, 163, 193, 395
AsuC2I CCSGG 1 cut(s) 174
AsuNHI GCTAGC 1 cut(s) 374
AvaII GGWCC 4 cut(s) 64, 163, 193, 395
BamHI GGATCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 92
BauI CACGAG 1 cut(s) 44
BbvI GCAGC 2 cut(s) 229, 232
BccI CCATC 2 cut(s) 317, 385
BceAI ACGGC 1 cut(s) 387
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 375
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 2 cut(s) 243, 246
BlsI GCNGC 2 cut(s) 244, 247
Bme1390I CCNGG 2 cut(s) 174, 383
Bme18I GGWCC 4 cut(s) 64, 163, 193, 395
BmgT120I GGNCC 4 cut(s) 64, 163, 193, 395
BmiI GGNNCC 5 cut(s) 164, 165, 195, 273, 396
BmrFI CCNGG 2 cut(s) 174, 383
BmsI GCATC 2 cut(s) 115, 236
BmtI GCTAGC 1 cut(s) 378
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpuMI CCSGG 1 cut(s) 174
Bsa29I ATCGAT 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 2 cut(s) 99, 382
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 5 cut(s) 155, 159, 173, 190, 203
Bse118I RCCGGY 1 cut(s) 353
Bse1I ACTGG 3 cut(s) 208, 217, 413
BseBI CCWGG 1 cut(s) 383
BseCI ATCGAT 1 cut(s) 365
BseDI CCNNGG 2 cut(s) 99, 382
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 5 cut(s) 155, 159, 173, 190, 203
BseNI ACTGG 3 cut(s) 208, 217, 413
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 2 cut(s) 229, 232
Bsh1236I CGCG 1 cut(s) 328
BshVI ATCGAT 1 cut(s) 365
BsiSI CCGG 3 cut(s) 174, 269, 354
BslFI GGGAC 2 cut(s) 149, 408
BslI CCNNNNNNNGG 5 cut(s) 155, 159, 173, 190, 203
BsmAI GTCTC 1 cut(s) 212
BsmFI GGGAC 2 cut(s) 149, 408
Bso31I GGTCTC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 3 cut(s) 138, 271, 366
BspACI CCGC 1 cut(s) 328
BspDI ATCGAT 1 cut(s) 365
BspFNI CGCG 1 cut(s) 328
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 5 cut(s) 164, 165, 195, 273, 396
BspOI GCTAGC 1 cut(s) 378
BspPI GGATC 3 cut(s) 133, 266, 279
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 353
BsrI ACTGG 3 cut(s) 208, 217, 413
BssAI RCCGGY 1 cut(s) 353
BssECI CCNNGG 2 cut(s) 99, 382
BssMI GATC 3 cut(s) 138, 271, 366
BssSI CACGAG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 383
BstC8I GCNNGC 4 cut(s) 74, 324, 359, 376
BstF5I GGATG 1 cut(s) 38
BstFNI CGCG 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 3 cut(s) 72, 328, 341
BstKTI GATC 3 cut(s) 141, 274, 369
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 3 cut(s) 138, 271, 366
BstMWI GCNNNNNNNGC 3 cut(s) 251, 345, 354
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 172, 381
BstUI CGCG 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 229, 232
BstX2I RGATCY 2 cut(s) 138, 271
BstYI RGATCY 2 cut(s) 138, 271
Bsu15I ATCGAT 1 cut(s) 365
BsuTUI ATCGAT 1 cut(s) 365
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 4 cut(s) 120, 201, 210, 406
Cac8I GCNNGC 4 cut(s) 74, 324, 359, 376
CciI TCATGA 1 cut(s) 114
CfoI GCGC 3 cut(s) 72, 328, 341
Cfr10I RCCGGY 1 cut(s) 353
Cfr13I GGNCC 4 cut(s) 64, 163, 193, 395
ClaI ATCGAT 1 cut(s) 365
CviAII CATG 1 cut(s) 115
CviJI RGCY 7 cut(s) 5, 76, 90, 254, 357, 374, 378
CviKI_1 RGCY 7 cut(s) 5, 76, 90, 254, 357, 374, 378
DpnI GATC 3 cut(s) 140, 273, 368
DpnII GATC 3 cut(s) 138, 271, 366
Eco24I GRGCYC 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 4 cut(s) 64, 163, 193, 395
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 381
EcoT38I GRGCYC 1 cut(s) 92
FaeI CATG 1 cut(s) 118
FaiI YATR 2 cut(s) 116, 260
FaqI GGGAC 2 cut(s) 149, 408
FatI CATG 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 243, 246
FokI GGATG 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 2 cut(s) 243, 246
FspBI CTAG 1 cut(s) 375
GlaI GCGC 3 cut(s) 71, 327, 340
GluI GCNGC 2 cut(s) 243, 246
HaeII RGCGCY 1 cut(s) 342
HapII CCGG 3 cut(s) 174, 269, 354
HhaI GCGC 3 cut(s) 72, 328, 341
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 3 cut(s) 70, 326, 339
HinP1I GCGC 3 cut(s) 70, 326, 339
HinfI GANTC 1 cut(s) 35
HpaII CCGG 3 cut(s) 174, 269, 354
Hpy188III TCNNGA 5 cut(s) 17, 85, 115, 142, 166
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 2 cut(s) 248, 322
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 345, 354
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 3 cut(s) 70, 326, 339
KflI GGGWCCC 1 cut(s) 163
Kzo9I GATC 3 cut(s) 138, 271, 366
LmnI GCTCC 2 cut(s) 176, 224
Lsp1109I GCAGC 2 cut(s) 229, 232
LweI GCATC 2 cut(s) 115, 236
MaeI CTAG 1 cut(s) 375
MaeII ACGT 1 cut(s) 106
MaeIII GTNAC 1 cut(s) 288
MalI GATC 3 cut(s) 140, 273, 368
MboI GATC 3 cut(s) 138, 271, 366
MflI RGATCY 2 cut(s) 138, 271
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 1 cut(s) 80
MlyI GAGTC 1 cut(s) 29
MnlI CCTC 5 cut(s) 40, 55, 94, 194, 325
MspI CCGG 3 cut(s) 174, 269, 354
MspR9I CCNGG 2 cut(s) 174, 383
MvaI CCWGG 1 cut(s) 383
MvnI CGCG 1 cut(s) 328
MwoI GCNNNNNNNGC 3 cut(s) 251, 345, 354
NciI CCSGG 1 cut(s) 174
NdeII GATC 3 cut(s) 138, 271, 366
NheI GCTAGC 1 cut(s) 374
NlaIII CATG 1 cut(s) 118
NlaIV GGNNCC 5 cut(s) 164, 165, 195, 273, 396
NmeAIII GCCGAG 1 cut(s) 367
PagI TCATGA 1 cut(s) 114
PflMI CCANNNNNTGG 2 cut(s) 155, 203
PkrI GCNGC 2 cut(s) 244, 247
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PpuMI RGGWCCY 1 cut(s) 163
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 5 cut(s) 164, 165, 195, 273, 396
PspPI GGNCC 4 cut(s) 64, 163, 193, 395
PspPPI RGGWCCY 1 cut(s) 163
PsuI RGATCY 2 cut(s) 138, 271
SatI GCNGC 2 cut(s) 243, 246
Sau3AI GATC 3 cut(s) 138, 271, 366
Sau96I GGNCC 4 cut(s) 64, 163, 193, 395
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 2 cut(s) 174, 383
SduI GDGCHC 1 cut(s) 92
SetI ASST 5 cut(s) 59, 66, 78, 109, 380
SfaNI GCATC 2 cut(s) 115, 236
SinI GGWCC 4 cut(s) 64, 163, 193, 395
Sse9I AATT 1 cut(s) 80
SsiI CCGC 1 cut(s) 328
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 2 cut(s) 172, 381
TaiI ACGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 18, 365
TasI AATT 1 cut(s) 80
TscAI CASTG 4 cut(s) 127, 208, 217, 413
TseI GCWGC 2 cut(s) 242, 245
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 4 cut(s) 127, 208, 217, 413
Van91I CCANNNNNTGG 2 cut(s) 155, 203
VpaK11BI GGWCC 4 cut(s) 64, 163, 193, 395
XapI RAATTY 1 cut(s) 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 405
XspI CTAG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.