Rmu_sc0002279.1_g000049

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002279.1
OG0000863
Physical Location & Seq
Reverse (-)
206655 .. 206912
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002279.1_g000049.1.cds

Sequence Viewer

Length: 258 bp
atgggtaacagcactcatgatacctgcaatgatgatccgcccagcgatacagcgacccgagagatccagcacaccctcgagttccaaacctcgaccaccgagacacgctcggtcatgaccattgatccagccacagcactcgagagagcaatgctcgctttaatagagacacgtgcacaggccgaggctgagcgggccgcggctgctgcagctcaccgagaggtcgaaaatatgaccaaccagaattgcaccctatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.28

Weight (kDa)

4.57

Isoelectric Point (pI)

25.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 193
AccII CGCG 1 cut(s) 200
AciI CCGC 4 cut(s) 38, 193, 198, 200
AclWI GGATC 3 cut(s) 29, 58, 119
AcvI CACGTG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 170
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 95, 161
Alw44I GTGCAC 1 cut(s) 174
AlwI GGATC 3 cut(s) 29, 58, 119
Ama87I CYCGRG 3 cut(s) 57, 77, 140
AoxI GGCC 2 cut(s) 180, 195
ApaLI GTGCAC 1 cut(s) 174
ApeKI GCWGC 3 cut(s) 203, 206, 209
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 206
AvaI CYCGRG 3 cut(s) 57, 77, 140
BaeGI GKGCMC 1 cut(s) 178
BbrPI CACGTG 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 190, 193, 221
BcoDI GTCTC 2 cut(s) 95, 161
BfmI CTRYAG 1 cut(s) 207
BfuAI ACCTGC 1 cut(s) 32
BisI GCNGC 5 cut(s) 198, 201, 204, 207, 210
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 5 cut(s) 199, 202, 205, 208, 211
BmeT110I CYCGRG 3 cut(s) 57, 77, 140
BmgT120I GGNCC 1 cut(s) 195
BplI GAGNNNNNCTC 4 cut(s) 92, 124, 138, 170
Bpu1102I GCTNAGC 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 183, 198
Bse3DI GCAATG 2 cut(s) 34, 156
BseDI CCNNGG 2 cut(s) 183, 198
BseMI GCAATG 2 cut(s) 34, 156
BseMII CTCAG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 3 cut(s) 190, 193, 221
BseYI CCCAGC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 182, 197
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 3 cut(s) 57, 77, 140
BsmAI GTCTC 2 cut(s) 95, 161
BsnI GGCC 2 cut(s) 182, 197
BsoBI CYCGRG 3 cut(s) 57, 77, 140
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 3 cut(s) 34, 63, 124
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 4 cut(s) 38, 193, 198, 200
BspANI GGCC 2 cut(s) 182, 197
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 200
BspHI TCATGA 2 cut(s) 16, 114
BspMAI CTGCAG 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 32
BspPI GGATC 3 cut(s) 29, 58, 119
BsrBI CCGCTC 1 cut(s) 193
BsrDI GCAATG 2 cut(s) 34, 156
BssECI CCNNGG 2 cut(s) 183, 198
BssMI GATC 3 cut(s) 34, 63, 124
BstBAI YACGTR 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 156, 195
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 200
BstKTI GATC 3 cut(s) 37, 66, 127
BstMAI GTCTC 2 cut(s) 95, 161
BstMBI GATC 3 cut(s) 34, 63, 124
BstMWI GCNNNNNNNGC 5 cut(s) 155, 194, 203, 206, 209
BstSFI CTRYAG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 178
BstUI CGCG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 190, 193, 221
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 2 cut(s) 182, 197
BtgI CCRYGG 1 cut(s) 198
BveI ACCTGC 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 156, 195
CciI TCATGA 2 cut(s) 16, 114
Cfr13I GGNCC 1 cut(s) 195
Cfr42I CCGCGG 1 cut(s) 201
CviAII CATG 2 cut(s) 17, 115
CviJI RGCY 6 cut(s) 131, 182, 188, 197, 203, 212
CviKI_1 RGCY 6 cut(s) 131, 182, 188, 197, 203, 212
DdeI CTNAG 1 cut(s) 189
DpnI GATC 3 cut(s) 36, 65, 126
DpnII GATC 3 cut(s) 34, 63, 124
EciI GGCGGA 1 cut(s) 27
Eco72I CACGTG 1 cut(s) 173
Eco88I CYCGRG 3 cut(s) 57, 77, 140
FaeI CATG 2 cut(s) 20, 118
FaiI YATR 4 cut(s) 18, 116, 233, 256
FatI CATG 2 cut(s) 16, 114
FauI CCCGC 1 cut(s) 186
Fnu4HI GCNGC 5 cut(s) 198, 201, 204, 207, 210
Fsp4HI GCNGC 5 cut(s) 198, 201, 204, 207, 210
GluI GCNGC 5 cut(s) 198, 201, 204, 207, 210
GsaI CCCAGC 1 cut(s) 45
HaeIII GGCC 2 cut(s) 182, 197
Hin1II CATG 2 cut(s) 20, 118
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 176
Hpy188III TCNNGA 3 cut(s) 17, 115, 142
Hpy8I GTNNAC 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 4 cut(s) 27, 176, 209, 249
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 194, 203, 206, 209
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 172
Hsp92II CATG 2 cut(s) 20, 118
KspI CCGCGG 1 cut(s) 201
Kzo9I GATC 3 cut(s) 34, 63, 124
LpnPI CCDG 6 cut(s) 37, 55, 80, 141, 164, 254
Lsp1109I GCAGC 3 cut(s) 190, 193, 221
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 5
MalI GATC 3 cut(s) 36, 65, 126
MbiI CCGCTC 1 cut(s) 193
MboI GATC 3 cut(s) 34, 63, 124
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 244
MnlI CCTC 4 cut(s) 86, 100, 178, 214
MseI TTAA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 200
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 5 cut(s) 155, 194, 203, 206, 209
NdeII GATC 3 cut(s) 34, 63, 124
NlaIII CATG 2 cut(s) 20, 118
NmeAIII GCCGAG 1 cut(s) 208
PaeR7I CTCGAG 2 cut(s) 77, 140
PagI TCATGA 2 cut(s) 16, 114
PkrI GCNGC 5 cut(s) 199, 202, 205, 208, 211
PmaCI CACGTG 1 cut(s) 173
PmlI CACGTG 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 173
PspCI CACGTG 1 cut(s) 173
PspFI CCCAGC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 195
PspXI VCTCGAGB 1 cut(s) 77
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 63
SacII CCGCGG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 5 cut(s) 198, 201, 204, 207, 210
Sau3AI GATC 3 cut(s) 34, 63, 124
Sau96I GGNCC 1 cut(s) 195
SduI GDGCHC 1 cut(s) 178
SetI ASST 5 cut(s) 26, 92, 175, 214, 225
SfcI CTRYAG 1 cut(s) 207
Sfr274I CTCGAG 2 cut(s) 77, 140
Sfr303I CCGCGG 1 cut(s) 201
SgrBI CCGCGG 1 cut(s) 201
SlaI CTCGAG 2 cut(s) 77, 140
SmlI CTYRAG 2 cut(s) 77, 140
SmoI CTYRAG 2 cut(s) 77, 140
Sse9I AATT 1 cut(s) 244
SsiI CCGC 4 cut(s) 38, 193, 198, 200
TaiI ACGT 1 cut(s) 175
TaqI TCGA 4 cut(s) 78, 92, 141, 225
TaqII GACCGA 1 cut(s) 100
TasI AATT 1 cut(s) 244
TauI GCSGC 2 cut(s) 200, 203
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TseI GCWGC 3 cut(s) 203, 206, 209
VneI GTGCAC 1 cut(s) 174
XhoI CTCGAG 2 cut(s) 77, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.