Rmu_co8426601.1_g000001

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8426601.1
OG0000863
Physical Location & Seq
Forward (+)
727 .. 1191
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8426601.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
atggcccatcagcacgagaccctgatactgaccattggtggagtccccacacctggggccgtcctcaccactgacccggacaccggccttgctggcacatttatactgccaacagcagaagcttctgcaagcctcacatgccccaccctaggcagcaccagcacaagaccacaacccgtacccaatatagcgggagcgtcaagcacaaacacagctgcaaccaccaatatacctccaccagatcccaacactcggttgctactccagatgaacgagaccatcgcctccttgcaggcgcgaatcgagagtgcagagagcaggttcggttggcaaccgattacatccggattccaaggaaagatgggaccattcagacctcggatacaagccaagaaatgcccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

134

Amino Acids

13.98

Weight (kDa)

7.85

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 309
AccII CGCG 1 cut(s) 298
AccIII TCCGGA 1 cut(s) 344
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 236
AfaI GTAC 1 cut(s) 180
AfiI CCNNNNNNNGG 5 cut(s) 53, 54, 83, 149, 252
AjnI CCWGG 1 cut(s) 52
AluBI AGCT 2 cut(s) 122, 215
AluI AGCT 2 cut(s) 122, 215
Alw26I GTCTC 2 cut(s) 11, 269
AlwI GGATC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 344
AoxI GGCC 3 cut(s) 3, 57, 85
ApeKI GCWGC 2 cut(s) 153, 215
AspA2I CCTAGG 1 cut(s) 148
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 3 cut(s) 4, 57, 365
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 365
AvrII CCTAGG 1 cut(s) 148
BauI CACGAG 1 cut(s) 14
BbvI GCAGC 2 cut(s) 165, 202
BccI CCATC 3 cut(s) 15, 287, 355
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 54
BciVI GTATCC 1 cut(s) 375
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 11, 269
BfaI CTAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 309
BfuI GTATCC 1 cut(s) 375
BglI GCCNNNNNGGC 1 cut(s) 93
BisI GCNGC 2 cut(s) 154, 216
BlnI CCTAGG 1 cut(s) 148
BlsI GCNGC 2 cut(s) 155, 217
Bme1390I CCNGG 2 cut(s) 54, 77
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 3 cut(s) 4, 57, 365
BmiI GGNNCC 2 cut(s) 58, 366
BmrFI CCNGG 2 cut(s) 54, 77
BpmI CTGGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 77
BsaI GGTCTC 2 cut(s) 11, 269
BsaJI CCNNGG 4 cut(s) 53, 148, 352, 377
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 54, 83, 149, 252
Bse118I RCCGGY 1 cut(s) 83
BseAI TCCGGA 1 cut(s) 344
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 4 cut(s) 53, 148, 352, 377
BseGI GGATG 1 cut(s) 341
BseLI CCNNNNNNNGG 5 cut(s) 53, 54, 83, 149, 252
BseXI GCAGC 2 cut(s) 165, 202
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 298
BshFI GGCC 3 cut(s) 5, 59, 87
BsiSI CCGG 3 cut(s) 77, 84, 345
BslFI GGGAC 2 cut(s) 29, 378
BslI CCNNNNNNNGG 5 cut(s) 53, 54, 83, 149, 252
BsmAI GTCTC 2 cut(s) 11, 269
BsmFI GGGAC 2 cut(s) 29, 378
BsnI GGCC 3 cut(s) 5, 59, 87
Bso31I GGTCTC 2 cut(s) 11, 269
Bsp13I TCCGGA 1 cut(s) 344
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 1 cut(s) 191
BspANI GGCC 3 cut(s) 5, 59, 87
BspEI TCCGGA 1 cut(s) 344
BspFNI CGCG 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 58, 366
BspMI ACCTGC 1 cut(s) 309
BspPI GGATC 1 cut(s) 236
BspTNI GGTCTC 2 cut(s) 11, 269
BsrFI RCCGGY 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 4 cut(s) 53, 148, 352, 377
BssMI GATC 1 cut(s) 241
BssSI CACGAG 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 148, 352
Bst2BI CACGAG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 54
BstC8I GCNNGC 3 cut(s) 94, 130, 294
BstF5I GGATG 1 cut(s) 341
BstFNI CGCG 1 cut(s) 298
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 2 cut(s) 11, 269
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 3 cut(s) 93, 138, 159
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 52, 75
BstUI CGCG 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 165, 202
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuI GTATCC 1 cut(s) 375
BsuRI GGCC 3 cut(s) 5, 59, 87
BtgZI GCGATG 1 cut(s) 265
BtsCI GGATG 1 cut(s) 341
BtsIMutI CAGTG 1 cut(s) 69
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 94, 130, 294
CfoI GCGC 1 cut(s) 298
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 3 cut(s) 4, 57, 365
CseI GACGC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 179
CviAII CATG 1 cut(s) 138
CviJI RGCY 7 cut(s) 5, 59, 87, 122, 132, 215, 389
CviKI_1 RGCY 7 cut(s) 5, 59, 87, 122, 132, 215, 389
CviQI GTAC 1 cut(s) 179
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 148, 352
Eco31I GGTCTC 2 cut(s) 11, 269
Eco47I GGWCC 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 148, 352
ErhI CCWWGG 2 cut(s) 148, 352
FaeI CATG 1 cut(s) 141
FaiI YATR 5 cut(s) 104, 139, 188, 230, 403
FaqI GGGAC 2 cut(s) 29, 378
FatI CATG 1 cut(s) 137
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 154, 216
FokI GGATG 1 cut(s) 328
Fsp4HI GCNGC 2 cut(s) 154, 216
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 297
GluI GCNGC 2 cut(s) 154, 216
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 3 cut(s) 5, 59, 87
HapII CCGG 3 cut(s) 77, 84, 345
HgaI GACGC 1 cut(s) 186
HhaI GCGC 1 cut(s) 298
Hin1II CATG 1 cut(s) 141
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 3 cut(s) 42, 300, 348
HpaII CCGG 3 cut(s) 77, 84, 345
HphI GGTGA 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 374, 381
Hpy188III TCNNGA 3 cut(s) 265, 304, 345
HpyCH4V TGCA 4 cut(s) 128, 218, 292, 311
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 138, 159
Hsp92II CATG 1 cut(s) 141
HspAI GCGC 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 344
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 194
Lsp1109I GCAGC 2 cut(s) 165, 202
MaeI CTAG 1 cut(s) 149
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MflI RGATCY 1 cut(s) 241
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 5 cut(s) 74, 143, 243, 295, 387
MroI TCCGGA 1 cut(s) 344
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 3 cut(s) 77, 84, 345
MspR9I CCNGG 2 cut(s) 54, 77
MvaI CCWGG 1 cut(s) 54
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 3 cut(s) 93, 138, 159
NciI CCSGG 1 cut(s) 77
NdeII GATC 1 cut(s) 241
NlaIII CATG 1 cut(s) 141
NlaIV GGNNCC 2 cut(s) 58, 366
NspI RCATGY 1 cut(s) 141
PfeI GAWTC 2 cut(s) 300, 348
PkrI GCNGC 2 cut(s) 155, 217
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 58, 366
PspPI GGNCC 3 cut(s) 4, 57, 365
PsuI RGATCY 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 180
RsaNI GTAC 1 cut(s) 179
SatI GCNGC 2 cut(s) 154, 216
Sau3AI GATC 1 cut(s) 241
Sau96I GGNCC 3 cut(s) 4, 57, 365
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 2 cut(s) 54, 77
SetI ASST 6 cut(s) 55, 124, 217, 235, 323, 379
SinI GGWCC 1 cut(s) 365
SsiI CCGC 1 cut(s) 191
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 52, 75
StyI CCWWGG 2 cut(s) 148, 352
TaqI TCGA 1 cut(s) 303
TfiI GAWTC 2 cut(s) 300, 348
TscAI CASTG 1 cut(s) 76
TseI GCWGC 2 cut(s) 153, 215
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 365
XceI RCATGY 1 cut(s) 141
XmaJI CCTAGG 1 cut(s) 148
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.