Rmu_sc0003441.1_g000081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003441.1
OG0000863
Physical Location & Seq
Reverse (-)
320114 .. 320620
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003441.1_g000081.1.cds

Sequence Viewer

Length: 507 bp
atgcgagacctcatggagacacacgcacaggtcgaggccaaacgtacgccggccatggctgcccgccgggaggtcgaaaacatgaacaaccagaatcgcaccttacgggaagcactcaagcggcgagtcgcgcatgacgacgtcttagacagggcccatcagcaggagaccccgataccgaccgtcggctgtgtccctacaccgggaccagccctcactgccgaccccgccaccggcctcgctggcacctttatacccccaaacctcacgtcaggaagcctcgctggccccgcgcatagcaacaccagcacaaaccctcaggtggtctacttgaattccgcactttttccaagccacctcagcgcctcaccaattccccaactgtctgccgatatggcagaaacctctggtgcaaacaccgatatgaccgccaacatacctccaccctatcctaaccccctgttattgctccaaatgagcgaagccatcgcctccttacaggcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

17.85

Weight (kDa)

5.65

Isoelectric Point (pI)

42.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 327
AccII CGCG 2 cut(s) 131, 293
AciI CCGC 6 cut(s) 64, 121, 228, 291, 339, 429
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 334
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 7 cut(s) 70, 163, 185, 202, 203, 233, 322
AgsI TTSAA 1 cut(s) 334
AjiI CACGTC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 11, 161
AoxI GGCC 5 cut(s) 36, 51, 153, 235, 286
ApaI GGGCCC 1 cut(s) 157
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 334
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspLEI GCGC 3 cut(s) 133, 295, 365
AspS9I GGNCC 4 cut(s) 153, 154, 206, 287
AsuC2I CCSGG 2 cut(s) 68, 204
AsuHPI GGTGA 1 cut(s) 360
AvaII GGWCC 1 cut(s) 206
AxyI CCTNAGG 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 157
BbvCI CCTCAGC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 165, 494
BcnI CCSGG 2 cut(s) 68, 204
BcoDI GTCTC 2 cut(s) 11, 161
BfoI RGCGCY 1 cut(s) 366
BglI GCCNNNNNGGC 3 cut(s) 243, 285, 395
BisI GCNGC 2 cut(s) 60, 122
BlsI GCNGC 2 cut(s) 61, 123
Bme1390I CCNGG 2 cut(s) 68, 204
Bme18I GGWCC 1 cut(s) 206
BmgBI CACGTC 1 cut(s) 270
BmgT120I GGNCC 4 cut(s) 153, 154, 206, 287
BmiI GGNNCC 4 cut(s) 155, 207, 247, 289
BmrFI CCNGG 2 cut(s) 68, 204
Bpu10I CCTNAGC 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 68, 204
BsaHI GRCGYC 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 54
Bsc4I CCNNNNNNNGG 7 cut(s) 70, 163, 185, 202, 203, 233, 322
Bse118I RCCGGY 2 cut(s) 49, 233
Bse21I CCTNAGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 54
BseLI CCNNNNNNNGG 7 cut(s) 70, 163, 185, 202, 203, 233, 322
BseMII CTCAG 2 cut(s) 332, 373
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 2 cut(s) 131, 293
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 5 cut(s) 38, 53, 155, 237, 288
BshNI GGYRCC 1 cut(s) 245
BsiEI CGRYCG 1 cut(s) 183
BsiSI CCGG 4 cut(s) 50, 67, 203, 234
BsiWI CGTACG 1 cut(s) 44
BslFI GGGAC 2 cut(s) 179, 219
BslI CCNNNNNNNGG 7 cut(s) 70, 163, 185, 202, 203, 233, 322
BsmAI GTCTC 2 cut(s) 11, 161
BsmFI GGGAC 2 cut(s) 179, 219
BsnI GGCC 5 cut(s) 38, 53, 155, 237, 288
Bso31I GGTCTC 1 cut(s) 161
Bsp120I GGGCCC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 157
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 6 cut(s) 64, 121, 228, 291, 339, 429
BspANI GGCC 5 cut(s) 38, 53, 155, 237, 288
BspCNI CTCAG 2 cut(s) 331, 372
BspFNI CGCG 2 cut(s) 131, 293
BspLI GGNNCC 4 cut(s) 155, 207, 247, 289
BspT107I GGYRCC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 161
BsrFI RCCGGY 2 cut(s) 49, 233
BssAI RCCGGY 2 cut(s) 49, 233
BssECI CCNNGG 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 2 cut(s) 184, 384
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 4 cut(s) 51, 64, 244, 286
BstDEI CTNAG 3 cut(s) 145, 318, 359
BstDSI CCRYGG 1 cut(s) 54
BstFNI CGCG 2 cut(s) 131, 293
BstH2I RGCGCY 1 cut(s) 366
BstHHI GCGC 3 cut(s) 133, 295, 365
BstMAI GTCTC 2 cut(s) 11, 161
BstMCI CGRYCG 1 cut(s) 183
BstSCI CCNGG 2 cut(s) 66, 202
BstSLI GKGCMC 1 cut(s) 157
BstUI CGCG 2 cut(s) 131, 293
BstV1I GCAGC 1 cut(s) 46
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 5 cut(s) 38, 53, 155, 237, 288
BtgI CCRYGG 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 472
BtrI CACGTC 1 cut(s) 270
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 4 cut(s) 51, 64, 244, 286
CfoI GCGC 3 cut(s) 133, 295, 365
Cfr10I RCCGGY 2 cut(s) 49, 233
Cfr13I GGNCC 4 cut(s) 153, 154, 206, 287
Csp6I GTAC 1 cut(s) 45
CviAII CATG 5 cut(s) 13, 55, 82, 134, 504
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 3 cut(s) 145, 318, 359
EaeI YGGCCR 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 206
Eco81I CCTNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 334
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 5 cut(s) 16, 58, 85, 137, 507
FaqI GGGAC 2 cut(s) 179, 219
FatI CATG 5 cut(s) 12, 54, 81, 133, 503
FauI CCCGC 3 cut(s) 71, 235, 298
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 60, 122
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 2 cut(s) 60, 122
GlaI GCGC 3 cut(s) 132, 294, 364
GluI GCNGC 2 cut(s) 60, 122
HaeII RGCGCY 1 cut(s) 366
HaeIII GGCC 5 cut(s) 38, 53, 155, 237, 288
HapII CCGG 4 cut(s) 50, 67, 203, 234
HhaI GCGC 3 cut(s) 133, 295, 365
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 5 cut(s) 16, 58, 85, 137, 507
Hin6I GCGC 3 cut(s) 131, 293, 363
HinP1I GCGC 3 cut(s) 131, 293, 363
HinfI GANTC 2 cut(s) 94, 126
HpaII CCGG 4 cut(s) 50, 67, 203, 234
HphI GGTGA 1 cut(s) 360
Hpy166II GTNNAC 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 2 cut(s) 143, 188
HpyCH4III ACNGT 2 cut(s) 184, 384
HpyCH4IV ACGT 3 cut(s) 43, 141, 269
HpyCH4V TGCA 1 cut(s) 413
HpyF3I CTNAG 3 cut(s) 145, 318, 359
HpySE526I ACGT 3 cut(s) 43, 141, 269
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 5 cut(s) 16, 58, 85, 137, 507
HspAI GCGC 3 cut(s) 131, 293, 363
KroI GCCGGC 1 cut(s) 49
KroNI GCCGGC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 474
Lsp1109I GCAGC 1 cut(s) 46
MaeII ACGT 3 cut(s) 43, 141, 269
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 2 cut(s) 334, 372
MlyI GAGTC 1 cut(s) 135
MroNI GCCGGC 1 cut(s) 49
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 4 cut(s) 50, 67, 203, 234
MspR9I CCNGG 2 cut(s) 68, 204
MvnI CGCG 2 cut(s) 131, 293
NaeI GCCGGC 1 cut(s) 51
NciI CCSGG 2 cut(s) 68, 204
NcoI CCATGG 1 cut(s) 54
NgoMIV GCCGGC 1 cut(s) 49
NlaIII CATG 5 cut(s) 16, 58, 85, 137, 507
NlaIV GGNNCC 4 cut(s) 155, 207, 247, 289
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 135
PdiI GCCGGC 1 cut(s) 51
PfeI GAWTC 1 cut(s) 94
Pfl23II CGTACG 1 cut(s) 44
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 61, 123
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PspLI CGTACG 1 cut(s) 44
PspN4I GGNNCC 4 cut(s) 155, 207, 247, 289
PspOMI GGGCCC 1 cut(s) 153
PspPI GGNCC 4 cut(s) 153, 154, 206, 287
PsyI GACNNNGTC 1 cut(s) 140
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
RseI CAYNNNNRTG 1 cut(s) 422
SatI GCNGC 2 cut(s) 60, 122
Sau96I GGNCC 4 cut(s) 153, 154, 206, 287
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 2 cut(s) 68, 204
SduI GDGCHC 1 cut(s) 157
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 334, 372
SsiI CCGC 6 cut(s) 64, 121, 228, 291, 339, 429
StyD4I CCNGG 2 cut(s) 66, 202
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 184, 384
TaiI ACGT 3 cut(s) 46, 144, 272
TaqI TCGA 2 cut(s) 33, 75
TasI AATT 2 cut(s) 334, 372
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 1 cut(s) 94
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 98
TspRI CASTG 1 cut(s) 223
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 327
ZraI GACGTC 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.