Rmu_sc0001190.1_g000046

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001190.1
OG0000863
Physical Location & Seq
Forward (+)
161816 .. 162100
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001190.1_g000046.1.cds

Sequence Viewer

Length: 285 bp
atgactcccctcgctccttgctggcagaacaacacgccgccaatggctactagcactcccgatactagtggtggggacctagcccacgaggcagtgacccgcgaggtccagggcactctcgagttccaaaccccgaacaccgagtcacgatcagtcatgaccactgatgcaaccactgcactagaaatagcgatgcacgacttcatggagacacgcgcacaggctgaggccgagcgcgcggcagccattgaagctcgccgtgaagtcgaaaatatgacaaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.25

Weight (kDa)

4.41

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 102, 216, 237, 239
AciI CCGC 3 cut(s) 38, 100, 239
AgsI TTSAA 1 cut(s) 251
AhlI ACTAGT 1 cut(s) 65
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 119
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AspLEI GCGC 3 cut(s) 218, 237, 239
AspS9I GGNCC 2 cut(s) 76, 106
AvaI CYCGRG 1 cut(s) 119
AvaII GGWCC 2 cut(s) 76, 106
BaeGI GKGCMC 1 cut(s) 116
BauI CACGAG 1 cut(s) 86
BbvCI CCTCAGC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 203
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 5 cut(s) 51, 66, 80, 182, 283
BglI GCCNNNNNGGC 1 cut(s) 89
BisI GCNGC 3 cut(s) 38, 240, 243
BlsI GCNGC 3 cut(s) 39, 241, 244
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 76, 106
BmeT110I CYCGRG 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 76, 106
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 157, 183
Bpu10I CCTNAGC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 216
BsePI GCGCGC 1 cut(s) 235
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 162
Bsh1236I CGCG 4 cut(s) 102, 216, 237, 239
BshFI GGCC 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 149
BspACI CCGC 3 cut(s) 38, 100, 239
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 217
BspFNI CGCG 4 cut(s) 102, 216, 237, 239
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 109
BssHII GCGCGC 1 cut(s) 235
BssMI GATC 1 cut(s) 149
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 3 cut(s) 23, 237, 256
BstDEI CTNAG 1 cut(s) 225
BstFNI CGCG 4 cut(s) 102, 216, 237, 239
BstHHI GCGC 3 cut(s) 218, 237, 239
BstKTI GATC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 4 cut(s) 89, 176, 236, 251
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 4 cut(s) 102, 216, 237, 239
BstV1I GCAGC 1 cut(s) 254
BsuRI GGCC 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 206
BtsI GCAGTG 2 cut(s) 99, 174
BtsIMutI CAGTG 3 cut(s) 99, 162, 174
Cac8I GCNNGC 3 cut(s) 23, 237, 256
CciI TCATGA 1 cut(s) 156
CfoI GCGC 3 cut(s) 218, 237, 239
Cfr13I GGNCC 2 cut(s) 76, 106
CviAII CATG 2 cut(s) 157, 205
CviJI RGCY 6 cut(s) 47, 83, 224, 230, 245, 254
CviKI_1 RGCY 6 cut(s) 47, 83, 224, 230, 245, 254
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 76, 106
Eco88I CYCGRG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 160, 208
FaiI YATR 3 cut(s) 158, 206, 275
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 156, 204
FauI CCCGC 1 cut(s) 107
Fnu4HI GCNGC 3 cut(s) 38, 240, 243
Fsp4HI GCNGC 3 cut(s) 38, 240, 243
FspBI CTAG 5 cut(s) 51, 66, 80, 182, 283
GlaI GCGC 3 cut(s) 217, 236, 238
GluI GCNGC 3 cut(s) 38, 240, 243
HaeIII GGCC 1 cut(s) 230
HhaI GCGC 3 cut(s) 218, 237, 239
Hin1II CATG 2 cut(s) 160, 208
Hin6I GCGC 3 cut(s) 216, 235, 237
HinP1I GCGC 3 cut(s) 216, 235, 237
HinfI GANTC 2 cut(s) 4, 143
Hpy188III TCNNGA 4 cut(s) 59, 119, 147, 157
HpyCH4V TGCA 3 cut(s) 170, 179, 196
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 176, 236, 251
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 2 cut(s) 160, 208
HspAI GCGC 3 cut(s) 216, 235, 237
Kzo9I GATC 1 cut(s) 149
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 4 cut(s) 7, 95, 122, 206
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 2 cut(s) 157, 183
MaeI CTAG 5 cut(s) 51, 66, 80, 182, 283
MaeIII GTNAC 2 cut(s) 94, 144
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 116
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 4 cut(s) 20, 82, 97, 220
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 4 cut(s) 102, 216, 237, 239
MwoI GCNNNNNNNGC 4 cut(s) 89, 176, 236, 251
NdeII GATC 1 cut(s) 149
NlaIII CATG 2 cut(s) 160, 208
NlaIV GGNNCC 1 cut(s) 77
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 94, 144
PaeR7I CTCGAG 1 cut(s) 119
PagI TCATGA 1 cut(s) 156
PauI GCGCGC 1 cut(s) 235
PkrI GCNGC 3 cut(s) 39, 241, 244
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 2 cut(s) 76, 106
PspPPI RGGWCCY 1 cut(s) 76
PteI GCGCGC 1 cut(s) 235
SatI GCNGC 3 cut(s) 38, 240, 243
Sau3AI GATC 1 cut(s) 149
Sau96I GGNCC 2 cut(s) 76, 106
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 116
SetI ASST 3 cut(s) 81, 108, 256
SfaNI GCATC 2 cut(s) 157, 183
Sfr274I CTCGAG 1 cut(s) 119
SinI GGWCC 2 cut(s) 76, 106
SlaI CTCGAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SpeI ACTAGT 1 cut(s) 65
SsiI CCGC 3 cut(s) 38, 100, 239
SspMI CTAG 5 cut(s) 51, 66, 80, 182, 283
StyD4I CCNGG 1 cut(s) 108
TaqI TCGA 2 cut(s) 120, 267
TauI GCSGC 2 cut(s) 40, 242
TscAI CASTG 3 cut(s) 99, 169, 181
TseFI GTSAC 2 cut(s) 94, 144
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 2 cut(s) 94, 144
TspDTI ATGAA 1 cut(s) 193
TspRI CASTG 3 cut(s) 99, 169, 181
VpaK11BI GGWCC 2 cut(s) 76, 106
XhoI CTCGAG 1 cut(s) 119
XspI CTAG 5 cut(s) 51, 66, 80, 182, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.