Rroxscaffold_7G00183200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000863
Physical Location & Seq
Reverse (-)
22296651 .. 22297803
1153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183200.1

Sequence Viewer

Length: 291 bp
ATGGCACCACAGGCACGAAGGGGTCCGAACCAAACCAGCACAGTCCATCTAAATATACACCGGACCGATATAGCTGCAAGGGGAAAACATACGTCCCACATCGAAGATAGGGAGACCCCTTTCCCCGTTCAACTCGAGGCATCCGCCACCACCCCCTTTGCCACAACCTATTCGAACGAGCCACCGTTAACCGATCCTAACACGATGTTGCTCCCGCAAGTGAGTAACTCCTTGCATGCCCTACAAGCAAGGGTGGAAGCAGCAGAGAATAGGGACACCGGAAGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.48

Weight (kDa)

6.16

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 2 cut(s) 144, 215
AclWI GGATC 1 cut(s) 188
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 188
Ama87I CYCGRG 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 74, 260
AspS9I GGNCC 2 cut(s) 23, 63
AsuII TTCGAA 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 2 cut(s) 23, 63
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 61, 272
BccI CCATC 1 cut(s) 54
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcoDI GTCTC 1 cut(s) 107
BisI GCNGC 2 cut(s) 75, 261
BlsI GCNGC 2 cut(s) 76, 262
Bme18I GGWCC 2 cut(s) 23, 63
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 2 cut(s) 23, 63
BmiI GGNNCC 2 cut(s) 6, 24
BmsI GCATC 1 cut(s) 149
Bpu14I TTCGAA 1 cut(s) 173
BsaI GGTCTC 1 cut(s) 107
BsaWI WCCGGW 2 cut(s) 60, 278
BseGI GGATG 1 cut(s) 140
BseXI GCAGC 2 cut(s) 61, 272
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 2 cut(s) 61, 279
BslFI GGGAC 2 cut(s) 79, 287
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 2 cut(s) 79, 287
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 173
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 144, 215
BspLI GGNNCC 2 cut(s) 6, 24
BspPI GGATC 1 cut(s) 188
BspT104I TTCGAA 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 107
BssMI GATC 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 43, 186
BstBI TTCGAA 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 237
BstF5I GGATG 1 cut(s) 140
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 11, 245
BstNSI RCATGY 1 cut(s) 239
BstV1I GCAGC 2 cut(s) 61, 272
BtsCI GGATG 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 23, 63
CpoI CGGWCCG 1 cut(s) 63
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CspI CGGWCCG 1 cut(s) 63
CviAII CATG 1 cut(s) 236
CviJI RGCY 3 cut(s) 74, 181, 285
CviKI_1 RGCY 3 cut(s) 74, 181, 285
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 23, 63
Eco88I CYCGRG 1 cut(s) 134
FaeI CATG 1 cut(s) 239
FaiI YATR 4 cut(s) 56, 71, 90, 237
FaqI GGGAC 2 cut(s) 79, 287
FatI CATG 1 cut(s) 235
FauI CCCGC 1 cut(s) 222
Fnu4HI GCNGC 2 cut(s) 75, 261
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 2 cut(s) 75, 261
GluI GCNGC 2 cut(s) 75, 261
HapII CCGG 2 cut(s) 61, 279
Hin1II CATG 1 cut(s) 239
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HpaI GTTAAC 1 cut(s) 189
HpaII CCGG 2 cut(s) 61, 279
Hpy166II GTNNAC 1 cut(s) 189
Hpy188I TCNGA 1 cut(s) 27
Hpy8I GTNNAC 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 12
HpyCH4III ACNGT 2 cut(s) 43, 186
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 2 cut(s) 77, 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 245
HpySE526I ACGT 1 cut(s) 92
Hsp92II CATG 1 cut(s) 239
KspAI GTTAAC 1 cut(s) 189
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 216
LpnPI CCDG 2 cut(s) 49, 74
Lsp1109I GCAGC 2 cut(s) 61, 272
LweI GCATC 1 cut(s) 149
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 116
MnlI CCTC 1 cut(s) 130
MseI TTAA 1 cut(s) 188
MspI CCGG 2 cut(s) 61, 279
MwoI GCNNNNNNNGC 2 cut(s) 11, 245
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 2 cut(s) 6, 24
NspI RCATGY 1 cut(s) 239
NspV TTCGAA 1 cut(s) 173
PaeI GCATGC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 134
PkrI GCNGC 2 cut(s) 76, 262
PspN4I GGNNCC 2 cut(s) 6, 24
PspPI GGNCC 2 cut(s) 23, 63
PspXI VCTCGAGB 1 cut(s) 134
Rsr2I CGGWCCG 1 cut(s) 63
RsrII CGGWCCG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 2 cut(s) 75, 261
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 2 cut(s) 23, 63
SetI ASST 3 cut(s) 76, 95, 170
SfaNI GCATC 1 cut(s) 149
Sfr274I CTCGAG 1 cut(s) 134
SfuI TTCGAA 1 cut(s) 173
SinI GGWCC 2 cut(s) 23, 63
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SphI GCATGC 1 cut(s) 239
SsiI CCGC 2 cut(s) 144, 215
TaaI ACNGT 2 cut(s) 43, 186
TaiI ACGT 1 cut(s) 95
TaqI TCGA 3 cut(s) 102, 135, 173
TaqII GACCGA 1 cut(s) 80
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TseI GCWGC 2 cut(s) 74, 260
VpaK11BI GGWCC 2 cut(s) 23, 63
XceI RCATGY 1 cut(s) 239
XhoI CTCGAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.