Rmu_sc0000637.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000637.1
OG0000863
Physical Location & Seq
Forward (+)
34302 .. 34625
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000637.1_g000008.1.cds

Sequence Viewer

Length: 324 bp
atgcctaccatcggtggtatcaacacacttggggccttcctaaccacagactcgagtactggacttgttggcactttcatcctaacctcgacaactgacacttctggaaccttcgctagcccaacactaaggaccgacgccactaccccccccgacctcaatacaaggttattaatccagatgagcgaaactatctccgccttacaggcacggattgaaaatggagaggatagatcccgatggcaactgataatgacgggatttcaaggaaaatgggaccattcacacctcggatatagggagaaaaacgcccacaaaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.7

Weight (kDa)

6.82

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AclWI GGATC 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 2 cut(s) 218, 266
AlwI GGATC 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 1 cut(s) 33
AseI ATTAAT 1 cut(s) 173
AspS9I GGNCC 3 cut(s) 33, 132, 277
AsuNHI GCTAGC 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 2 cut(s) 132, 277
BccI CCATC 2 cut(s) 17, 234
BfaI CTAG 1 cut(s) 117
BglI GCCNNNNNGGC 1 cut(s) 206
BmcAI AGTACT 1 cut(s) 58
Bme18I GGWCC 2 cut(s) 132, 277
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 3 cut(s) 33, 132, 277
BmiI GGNNCC 3 cut(s) 34, 109, 278
BmtI GCTAGC 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 11
BseNI ACTGG 1 cut(s) 64
BshFI GGCC 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 52
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 35
BsoBI CYCGRG 1 cut(s) 52
Bsp143I GATC 1 cut(s) 233
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 35
BspLI GGNNCC 3 cut(s) 34, 109, 278
BspOI GCTAGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 228
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 233
BssNI GRCGYC 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 128
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 1 cut(s) 236
BstMBI GATC 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 118
Cfr13I GGNCC 3 cut(s) 33, 132, 277
CseI GACGC 1 cut(s) 146
Csp6I GTAC 1 cut(s) 57
CviJI RGCY 2 cut(s) 35, 120
CviKI_1 RGCY 2 cut(s) 35, 120
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 1 cut(s) 128
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
EciI GGCGGA 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 132, 277
Eco88I CYCGRG 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 33
FaiI YATR 1 cut(s) 297
FaqI GGGAC 1 cut(s) 290
FokI GGATG 1 cut(s) 65
FspBI CTAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 35
HgaI GACGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 138
HinfI GANTC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 293
Hpy188III TCNNGA 3 cut(s) 105, 178, 237
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 2 cut(s) 46, 121
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 128
Hsp92I GRCGYC 1 cut(s) 138
Kzo9I GATC 1 cut(s) 233
LpnPI CCDG 4 cut(s) 45, 90, 191, 191
MaeI CTAG 1 cut(s) 117
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MflI RGATCY 1 cut(s) 233
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 4 cut(s) 97, 167, 220, 299
MseI TTAA 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 1 cut(s) 233
NheI GCTAGC 1 cut(s) 116
NlaIV GGNNCC 3 cut(s) 34, 109, 278
PaeR7I CTCGAG 1 cut(s) 52
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PshBI ATTAAT 1 cut(s) 173
PspN4I GGNNCC 3 cut(s) 34, 109, 278
PspPI GGNCC 3 cut(s) 33, 132, 277
PspXI VCTCGAGB 1 cut(s) 52
PsuI RGATCY 1 cut(s) 233
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
SaqAI TTAA 1 cut(s) 173
Sau3AI GATC 1 cut(s) 233
Sau96I GGNCC 3 cut(s) 33, 132, 277
ScaI AGTACT 1 cut(s) 58
SchI GAGTC 1 cut(s) 44
SetI ASST 5 cut(s) 89, 113, 159, 170, 291
Sfr274I CTCGAG 1 cut(s) 52
SinI GGWCC 2 cut(s) 132, 277
SlaI CTCGAG 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
SsiI CCGC 1 cut(s) 198
SspMI CTAG 1 cut(s) 117
TaqI TCGA 2 cut(s) 53, 89
TaqII GACCGA 1 cut(s) 149
TatI WGTACW 1 cut(s) 56
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 226
VpaK11BI GGWCC 2 cut(s) 132, 277
VspI ATTAAT 1 cut(s) 173
XhoI CTCGAG 1 cut(s) 52
XspI CTAG 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.