Rmu_co8094356.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8094356.1
OG0000863
Physical Location & Seq
Forward (+)
1 .. 414
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8094356.1_g000001.1.cds

Sequence Viewer

Length: 414 bp
gagaccgcgactcacgaggttcagcgaactctcaagttccagagcccggacacctggccgaggtcagttgtaatcgctgacccaaccacagcgctacagatagtaatgcgcgacctcatggagacacgcgcacaggttgaaaaaatgtccaaccagaaccgcaccctacgagaagcactccagcgacgtgtctcgcatgacgacagggcccaccaacaggagaccccgataccaaccattggcggtgttcccacacagggaccgaccctcacagctgatcccgccacctgcctagctggcaccttcgtgcccccaaacctcgtatcgggaaacctcaccagcatggagccacaagtgatctacctgaattccccactccttgcaggtcatcttggcacctccccaactccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.96

Weight (kDa)

6.07

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 296
Acc36I ACCTGC 2 cut(s) 296, 374
AccB1I GGYRCC 2 cut(s) 299, 395
AccB7I CCANNNNNTGG 1 cut(s) 239
AccII CGCG 3 cut(s) 8, 111, 129
AciI CCGC 4 cut(s) 6, 160, 243, 282
AclWI GGATC 1 cut(s) 272
AcoI YGGCCR 1 cut(s) 56
AcsI RAATTY 1 cut(s) 367
AfeI AGCGCT 1 cut(s) 93
AfiI CCNNNNNNNGG 6 cut(s) 46, 60, 217, 239, 257, 325
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 1 cut(s) 140
AjiI CACGTC 1 cut(s) 188
AjnI CCWGG 1 cut(s) 53
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 2 cut(s) 275, 296
AluI AGCT 2 cut(s) 275, 296
Alw26I GTCTC 3 cut(s) 116, 196, 215
AlwI GGATC 1 cut(s) 272
Aor51HI AGCGCT 1 cut(s) 93
AoxI GGCC 2 cut(s) 56, 207
ApaI GGGCCC 1 cut(s) 211
ApoI RAATTY 1 cut(s) 367
AspLEI GCGC 3 cut(s) 94, 111, 131
AspS9I GGNCC 3 cut(s) 207, 208, 260
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 2 cut(s) 211, 312
BanI GGYRCC 2 cut(s) 299, 395
BanII GRGCYC 2 cut(s) 47, 211
BauI CACGAG 1 cut(s) 14
BciT130I CCWGG 1 cut(s) 55
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 3 cut(s) 116, 196, 215
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 95
BfuAI ACCTGC 2 cut(s) 296, 374
BglI GCCNNNNNGGC 1 cut(s) 297
Bme1390I CCNGG 2 cut(s) 47, 55
Bme18I GGWCC 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 207, 208, 260
BmiI GGNNCC 5 cut(s) 209, 261, 301, 348, 397
BmrFI CCNGG 2 cut(s) 47, 55
BplI GAGNNNNNCTC 2 cut(s) 162, 194
BpmI CTGGAG 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 17
BpuMI CCSGG 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 6 cut(s) 46, 60, 217, 239, 257, 325
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 59
BseLI CCNNNNNNNGG 6 cut(s) 46, 60, 217, 239, 257, 325
BseSI GKGCMC 2 cut(s) 211, 312
Bsh1236I CGCG 3 cut(s) 8, 111, 129
BshFI GGCC 2 cut(s) 58, 209
BshNI GGYRCC 2 cut(s) 299, 395
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 6 cut(s) 46, 60, 217, 239, 257, 325
BsmAI GTCTC 3 cut(s) 116, 196, 215
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 2 cut(s) 58, 209
Bso31I GGTCTC 1 cut(s) 215
Bsp120I GGGCCC 1 cut(s) 207
Bsp1286I GDGCHC 3 cut(s) 47, 211, 312
Bsp143I GATC 2 cut(s) 277, 357
BspACI CCGC 4 cut(s) 6, 160, 243, 282
BspANI GGCC 2 cut(s) 58, 209
BspFNI CGCG 3 cut(s) 8, 111, 129
BspLI GGNNCC 5 cut(s) 209, 261, 301, 348, 397
BspMI ACCTGC 2 cut(s) 296, 374
BspPI GGATC 1 cut(s) 272
BspT107I GGYRCC 2 cut(s) 299, 395
BspTNI GGTCTC 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 2 cut(s) 277, 357
BssSI CACGAG 1 cut(s) 14
Bst2BI CACGAG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 298
BstENI CCTNNNNNAGG 1 cut(s) 58
BstFNI CGCG 3 cut(s) 8, 111, 129
BstH2I RGCGCY 1 cut(s) 95
BstHHI GCGC 3 cut(s) 94, 111, 131
BstKTI GATC 2 cut(s) 280, 360
BstMAI GTCTC 3 cut(s) 116, 196, 215
BstMBI GATC 2 cut(s) 277, 357
BstMWI GCNNNNNNNGC 2 cut(s) 281, 297
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 45, 53
BstSFI CTRYAG 1 cut(s) 95
BstSLI GKGCMC 2 cut(s) 211, 312
BstUI CGCG 3 cut(s) 8, 111, 129
BsuRI GGCC 2 cut(s) 58, 209
BtrI CACGTC 1 cut(s) 188
BveI ACCTGC 2 cut(s) 296, 374
Cac8I GCNNGC 1 cut(s) 298
CfoI GCGC 3 cut(s) 94, 111, 131
Cfr13I GGNCC 3 cut(s) 207, 208, 260
CviAII CATG 3 cut(s) 118, 197, 343
CviJI RGCY 6 cut(s) 45, 58, 209, 275, 296, 349
CviKI_1 RGCY 6 cut(s) 45, 58, 209, 275, 296, 349
DpnI GATC 2 cut(s) 279, 359
DpnII GATC 2 cut(s) 277, 357
EaeI YGGCCR 1 cut(s) 56
Eco24I GRGCYC 2 cut(s) 47, 211
Eco31I GGTCTC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 260
Eco47III AGCGCT 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 53
EcoT38I GRGCYC 2 cut(s) 47, 211
FaeI CATG 3 cut(s) 121, 200, 346
FaiI YATR 3 cut(s) 119, 198, 344
FaqI GGGAC 1 cut(s) 273
FatI CATG 3 cut(s) 117, 196, 342
FauI CCCGC 1 cut(s) 289
FriOI GRGCYC 2 cut(s) 47, 211
FspBI CTAG 1 cut(s) 293
GlaI GCGC 3 cut(s) 93, 110, 130
GsuI CTGGAG 1 cut(s) 164
HaeII RGCGCY 1 cut(s) 95
HaeIII GGCC 2 cut(s) 58, 209
HapII CCGG 1 cut(s) 47
HhaI GCGC 3 cut(s) 94, 111, 131
Hin1II CATG 3 cut(s) 121, 200, 346
Hin6I GCGC 3 cut(s) 92, 109, 129
HinP1I GCGC 3 cut(s) 92, 109, 129
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 328
Hpy188III TCNNGA 3 cut(s) 14, 40, 327
Hpy99I CGWCG 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 297
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 3 cut(s) 121, 200, 346
HspAI GCGC 3 cut(s) 92, 109, 129
Kzo9I GATC 2 cut(s) 277, 357
LmnI GCTCC 1 cut(s) 346
MaeI CTAG 1 cut(s) 293
MaeII ACGT 1 cut(s) 187
MalI GATC 2 cut(s) 279, 359
MboI GATC 2 cut(s) 277, 357
MhlI GDGCHC 3 cut(s) 47, 211, 312
MluCI AATT 1 cut(s) 367
MlyI GAGTC 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 7 cut(s) 10, 54, 125, 278, 329, 344, 409
MslI CAYNNNNRTG 2 cut(s) 305, 341
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 47, 55
MvaI CCWGG 1 cut(s) 55
MvnI CGCG 3 cut(s) 8, 111, 129
MwoI GCNNNNNNNGC 2 cut(s) 281, 297
NciI CCSGG 1 cut(s) 47
NdeII GATC 2 cut(s) 277, 357
NlaIII CATG 3 cut(s) 121, 200, 346
NlaIV GGNNCC 5 cut(s) 209, 261, 301, 348, 397
NmeAIII GCCGAG 1 cut(s) 84
OliI CACNNNNGTG 1 cut(s) 305
PaqCI CACCTGC 1 cut(s) 296
PflMI CCANNNNNTGG 1 cut(s) 239
PleI GAGTC 1 cut(s) 4
PpsI GAGTC 1 cut(s) 4
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 5 cut(s) 209, 261, 301, 348, 397
PspOMI GGGCCC 1 cut(s) 207
PspPI GGNCC 3 cut(s) 207, 208, 260
PvuII CAGCTG 1 cut(s) 275
RseI CAYNNNNRTG 2 cut(s) 305, 341
Sau3AI GATC 2 cut(s) 277, 357
Sau96I GGNCC 3 cut(s) 207, 208, 260
SchI GAGTC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 47, 55
SduI GDGCHC 3 cut(s) 47, 211, 312
SfcI CTRYAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 305, 341
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 1 cut(s) 367
SsiI CCGC 4 cut(s) 6, 160, 243, 282
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 45, 53
TaiI ACGT 1 cut(s) 190
TaqII GACCGA 1 cut(s) 277
TasI AATT 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 260
XagI CCTNNNNNAGG 1 cut(s) 58
XapI RAATTY 1 cut(s) 367
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.