Rmu_sc0007877.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007877.1
OG0000863
Physical Location & Seq
Reverse (-)
45413 .. 46153
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007877.1_g000013.1.cds

Sequence Viewer

Length: 645 bp
atggctaccagcactcccgataccagtagtgacaatccgccccacgaggcagcgacccgtgaggtccagcgtaatcttgaattcttgagcccaaacaccgacgcacgttcagtcatgaccactaatgcgaccaccgcacttgagatagcgatgcgtgacctaatggagacactcgcgagcaatgaggcattagaccgggcccgtcagcaggagaccctgataccaaccattggtggggtcccgagactcgaagaagtcctcactacggacccatgcaccggtctcgttggcacttttgtgccaccaagcgcagcctctggaagccccacgggccccaccccaggcaacaccagcactggacaacaagtaatttacctgaactcccctattttccccaatcagctcggcacaacgccaccacctcagcctatgcctgatatggccggagcctcaggcacaaacgtagccgaaaccgctaatatacctccacccgaccccaatactctgttgttacaccaaatgagcgaaaccatcgcctccttgcaggggcggattaagaatgccaaaagcaggactggttggcaaccgatcacgacggatttcatggaaagatgggaccattcactccccggatacaagccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

22.83

Weight (kDa)

4.71

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 230
AccII CGCG 1 cut(s) 176
AciI CCGC 4 cut(s) 38, 135, 474, 550
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 80
AfiI CCNNNNNNNGG 8 cut(s) 208, 230, 234, 265, 278, 341, 546, 570
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 340
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
Alw26I GTCTC 4 cut(s) 161, 206, 238, 287
AlwNI CAGNNNCTG 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 3 cut(s) 198, 331, 441
ApaI GGGCCC 2 cut(s) 202, 335
ApeKI GCWGC 2 cut(s) 50, 311
ApoI RAATTY 1 cut(s) 80
AsiGI ACCGGT 1 cut(s) 278
AspLEI GCGC 1 cut(s) 311
AspS9I GGNCC 8 cut(s) 64, 198, 199, 238, 268, 331, 332, 616
AsuC2I CCSGG 2 cut(s) 197, 630
AvaI CYCGRG 1 cut(s) 241
AvaII GGWCC 4 cut(s) 64, 238, 268, 616
AxyI CCTNAGG 1 cut(s) 451
BaeGI GKGCMC 2 cut(s) 202, 335
BanII GRGCYC 3 cut(s) 92, 202, 335
BauI CACGAG 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 62, 323
BccI CCATC 2 cut(s) 539, 606
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 1 cut(s) 626
BcnI CCSGG 2 cut(s) 197, 630
BcoDI GTCTC 4 cut(s) 161, 206, 238, 287
BfuI GTATCC 1 cut(s) 626
BglI GCCNNNNNGGC 1 cut(s) 330
BisI GCNGC 2 cut(s) 51, 312
BlsI GCNGC 2 cut(s) 52, 313
Bme1390I CCNGG 3 cut(s) 197, 342, 630
Bme18I GGWCC 4 cut(s) 64, 238, 268, 616
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 8 cut(s) 64, 198, 199, 238, 268, 331, 332, 616
BmiI GGNNCC 8 cut(s) 200, 239, 240, 270, 333, 334, 448, 617
BmrFI CCNGG 3 cut(s) 197, 342, 630
BmsI GCATC 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 423
BpuEI CTTGAG 2 cut(s) 106, 161
BpuMI CCSGG 2 cut(s) 197, 630
BsaI GGTCTC 2 cut(s) 206, 287
BsaJI CCNNGG 3 cut(s) 327, 340, 628
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 3 cut(s) 28, 365, 395
Bsc4I CCNNNNNNNGG 8 cut(s) 208, 230, 234, 265, 278, 341, 546, 570
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 3 cut(s) 24, 361, 580
Bse21I CCTNAGG 1 cut(s) 451
Bse3DI GCAATG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 3 cut(s) 327, 340, 628
BseLI CCNNNNNNNGG 8 cut(s) 208, 230, 234, 265, 278, 341, 546, 570
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 437, 465
BseNI ACTGG 3 cut(s) 24, 361, 580
BseSI GKGCMC 2 cut(s) 202, 335
BseXI GCAGC 2 cut(s) 62, 323
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 3 cut(s) 200, 333, 443
BshTI ACCGGT 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 4 cut(s) 196, 279, 444, 630
BslFI GGGAC 2 cut(s) 224, 629
BslI CCNNNNNNNGG 8 cut(s) 208, 230, 234, 265, 278, 341, 546, 570
BsmAI GTCTC 4 cut(s) 161, 206, 238, 287
BsmFI GGGAC 2 cut(s) 224, 629
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 3 cut(s) 200, 333, 443
Bso31I GGTCTC 2 cut(s) 206, 287
BsoBI CYCGRG 1 cut(s) 241
Bsp120I GGGCCC 2 cut(s) 198, 331
Bsp1286I GDGCHC 3 cut(s) 92, 202, 335
Bsp143I GATC 1 cut(s) 588
Bsp68I TCGCGA 1 cut(s) 176
BspACI CCGC 4 cut(s) 38, 135, 474, 550
BspANI GGCC 3 cut(s) 200, 333, 443
BspCNI CTCAG 2 cut(s) 436, 464
BspFNI CGCG 1 cut(s) 176
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 8 cut(s) 200, 239, 240, 270, 333, 334, 448, 617
BspTNI GGTCTC 2 cut(s) 206, 287
BsrDI GCAATG 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 3 cut(s) 24, 361, 580
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 3 cut(s) 327, 340, 628
BssMI GATC 1 cut(s) 588
BssSI CACGAG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 423, 451
BstDSI CCRYGG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 311
BstKTI GATC 1 cut(s) 591
BstMAI GTCTC 4 cut(s) 161, 206, 238, 287
BstMBI GATC 1 cut(s) 588
BstMWI GCNNNNNNNGC 4 cut(s) 134, 330, 351, 473
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 3 cut(s) 195, 340, 628
BstSLI GKGCMC 2 cut(s) 202, 335
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 62, 323
Bsu36I CCTNAGG 1 cut(s) 451
BsuI GTATCC 1 cut(s) 626
BsuRI GGCC 3 cut(s) 200, 333, 443
BtgI CCRYGG 1 cut(s) 327
BtgZI GCGATG 2 cut(s) 164, 517
BtsIMutI CAGTG 1 cut(s) 354
BtuMI TCGCGA 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 178
CaiI CAGNNNCTG 1 cut(s) 317
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 8 cut(s) 64, 198, 199, 238, 268, 331, 332, 616
CseI GACGC 1 cut(s) 110
CspAI ACCGGT 1 cut(s) 278
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 4 cut(s) 115, 273, 604, 642
DdeI CTNAG 2 cut(s) 423, 451
DpnI GATC 1 cut(s) 590
DpnII GATC 1 cut(s) 588
EaeI YGGCCR 1 cut(s) 441
EciI GGCGGA 2 cut(s) 27, 565
Eco24I GRGCYC 3 cut(s) 92, 202, 335
Eco31I GGTCTC 2 cut(s) 206, 287
Eco47I GGWCC 4 cut(s) 64, 238, 268, 616
Eco81I CCTNAGG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 241
EcoO109I RGGNCCY 2 cut(s) 238, 332
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 340
EcoT38I GRGCYC 3 cut(s) 92, 202, 335
FaeI CATG 4 cut(s) 118, 276, 607, 645
FaiI YATR 7 cut(s) 116, 274, 431, 440, 482, 605, 643
FaqI GGGAC 2 cut(s) 224, 629
FatI CATG 4 cut(s) 114, 272, 603, 641
Fnu4HI GCNGC 2 cut(s) 51, 312
FriOI GRGCYC 3 cut(s) 92, 202, 335
Fsp4HI GCNGC 2 cut(s) 51, 312
GlaI GCGC 1 cut(s) 310
GluI GCNGC 2 cut(s) 51, 312
HaeIII GGCC 3 cut(s) 200, 333, 443
HapII CCGG 4 cut(s) 196, 279, 444, 630
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 311
Hin1II CATG 4 cut(s) 118, 276, 607, 645
Hin6I GCGC 1 cut(s) 309
HinP1I GCGC 1 cut(s) 309
HinfI GANTC 1 cut(s) 246
HpaII CCGG 4 cut(s) 196, 279, 444, 630
Hpy188III TCNNGA 8 cut(s) 17, 77, 85, 115, 175, 241, 318, 592
Hpy99I CGWCG 2 cut(s) 104, 598
HpyCH4IV ACGT 2 cut(s) 106, 462
HpyCH4V TGCA 2 cut(s) 276, 544
HpyF10VI GCNNNNNNNGC 4 cut(s) 134, 330, 351, 473
HpyF3I CTNAG 2 cut(s) 423, 451
HpySE526I ACGT 2 cut(s) 106, 462
Hsp92II CATG 4 cut(s) 118, 276, 607, 645
HspAI GCGC 1 cut(s) 309
KflI GGGWCCC 1 cut(s) 238
Kzo9I GATC 1 cut(s) 588
LmnI GCTCC 1 cut(s) 446
Lsp1109I GCAGC 2 cut(s) 62, 323
LweI GCATC 1 cut(s) 141
MaeII ACGT 2 cut(s) 106, 462
MaeIII GTNAC 3 cut(s) 29, 155, 510
MalI GATC 1 cut(s) 590
MboI GATC 1 cut(s) 588
MboII GAAGA 1 cut(s) 263
MhlI GDGCHC 3 cut(s) 92, 202, 335
MluCI AATT 2 cut(s) 80, 369
MlyI GAGTC 1 cut(s) 240
MnlI CCTC 9 cut(s) 40, 55, 178, 269, 325, 432, 460, 495, 547
MseI TTAA 1 cut(s) 555
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 4 cut(s) 196, 279, 444, 630
MspR9I CCNGG 3 cut(s) 197, 342, 630
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 4 cut(s) 134, 330, 351, 473
NciI CCSGG 2 cut(s) 197, 630
NdeII GATC 1 cut(s) 588
NlaIII CATG 4 cut(s) 118, 276, 607, 645
NlaIV GGNNCC 8 cut(s) 200, 239, 240, 270, 333, 334, 448, 617
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 29, 155
NruI TCGCGA 1 cut(s) 176
OliI CACNNNNGTG 1 cut(s) 296
PagI TCATGA 1 cut(s) 114
PctI GAATGC 1 cut(s) 565
PflMI CCANNNNNTGG 1 cut(s) 230
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 2 cut(s) 52, 313
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 8 cut(s) 200, 239, 240, 270, 333, 334, 448, 617
PspOMI GGGCCC 2 cut(s) 198, 331
PspPI GGNCC 8 cut(s) 64, 198, 199, 238, 268, 331, 332, 616
PspPPI RGGWCCY 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 317
RruI TCGCGA 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 2 cut(s) 51, 312
Sau3AI GATC 1 cut(s) 588
Sau96I GGNCC 8 cut(s) 64, 198, 199, 238, 268, 331, 332, 616
SchI GAGTC 1 cut(s) 240
ScrFI CCNGG 3 cut(s) 197, 342, 630
SduI GDGCHC 3 cut(s) 92, 202, 335
SetI ASST 8 cut(s) 66, 109, 162, 378, 405, 424, 465, 487
SfaNI GCATC 1 cut(s) 141
SinI GGWCC 4 cut(s) 64, 238, 268, 616
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 2 cut(s) 85, 140
SmoI CTYRAG 2 cut(s) 85, 140
Sse9I AATT 2 cut(s) 80, 369
SsiI CCGC 4 cut(s) 38, 135, 474, 550
StyD4I CCNGG 3 cut(s) 195, 340, 628
TaiI ACGT 2 cut(s) 109, 465
TaqI TCGA 1 cut(s) 249
TasI AATT 2 cut(s) 80, 369
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 2 cut(s) 29, 155
TseI GCWGC 2 cut(s) 50, 311
Tsp45I GTSAC 2 cut(s) 29, 155
TspDTI ATGAA 1 cut(s) 592
TspGWI ACGGA 2 cut(s) 281, 611
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 230
VpaK11BI GGWCC 4 cut(s) 64, 238, 268, 616
XapI RAATTY 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.