Rmu_sc0000161.1_g000045

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000161.1
OG0000863
Physical Location & Seq
Forward (+)
202941 .. 203240
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000161.1_g000045.1.cds

Sequence Viewer

Length: 300 bp
atgaccactaatgcgaccaccgcactcgagataacgatgcgtgacctaatggaaacatgtgcacaagccgaggccgagcgtgcggctgctcgccaagaagtggaaaacttgacaaaccagaactgtattctttgggaggcactccagcgacgaattgcaaacaacgaggcattagacatggcccttcaacaagaaatcctgataccgacaataggtggtgtcccgacacccggagcagtccttaccatagactcgaccactggtctcgctggcacttttgtgccactaagcgtcacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.61

Weight (kDa)

4.23

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 100
AciI CCGC 2 cut(s) 21, 83
AfiI CCNNNNNNNGG 3 cut(s) 100, 212, 230
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 1 cut(s) 188
AhdI GACNNNNNGTC 1 cut(s) 261
AleI CACNNNNGTG 1 cut(s) 278
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 269
Alw44I GTGCAC 1 cut(s) 60
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 2 cut(s) 72, 180
ApaLI GTGCAC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 26
BaeGI GKGCMC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 73
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 269
BisI GCNGC 2 cut(s) 84, 87
BlsI GCNGC 2 cut(s) 85, 88
Bme1390I CCNGG 1 cut(s) 231
BmeRI GACNNNNNGTC 1 cut(s) 261
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 128
BpuMI CCSGG 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 212, 230
Bse1I ACTGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 3 cut(s) 100, 212, 230
BseNI ACTGG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 2 cut(s) 74, 182
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 206
BslI CCNNNNNNNGG 3 cut(s) 100, 212, 230
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 2 cut(s) 74, 182
Bso31I GGTCTC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 64
BspACI CCGC 2 cut(s) 21, 83
BspANI GGCC 2 cut(s) 74, 182
BspTNI GGTCTC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 125
BstC8I GCNNGC 3 cut(s) 81, 91, 271
BstDEI CTNAG 1 cut(s) 287
BstMAI GTCTC 1 cut(s) 269
BstMWI GCNNNNNNNGC 2 cut(s) 20, 80
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 229
BstSLI GKGCMC 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 73
BsuRI GGCC 2 cut(s) 74, 182
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 3 cut(s) 81, 91, 271
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 280
CviAII CATG 2 cut(s) 57, 178
CviJI RGCY 4 cut(s) 68, 74, 86, 182
CviKI_1 RGCY 4 cut(s) 68, 74, 86, 182
DdeI CTNAG 1 cut(s) 287
DriI GACNNNNNGTC 1 cut(s) 261
Eam1105I GACNNNNNGTC 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 26
FaeI CATG 2 cut(s) 60, 181
FaiI YATR 3 cut(s) 58, 179, 248
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 56, 177
Fnu4HI GCNGC 2 cut(s) 84, 87
Fsp4HI GCNGC 2 cut(s) 84, 87
GluI GCNGC 2 cut(s) 84, 87
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 2 cut(s) 74, 182
HapII CCGG 1 cut(s) 231
HgaI GACGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 60, 181
HinfI GANTC 1 cut(s) 251
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 62
Hpy188III TCNNGA 3 cut(s) 28, 199, 223
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 2 cut(s) 62, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 80
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 2 cut(s) 60, 181
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 6 cut(s) 131, 158, 212, 244, 246, 255
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 27
MaeIII GTNAC 2 cut(s) 41, 292
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 1 cut(s) 153
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 3 cut(s) 64, 130, 160
MslI CAYNNNNRTG 1 cut(s) 278
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 20, 80
NciI CCSGG 1 cut(s) 231
NlaIII CATG 2 cut(s) 60, 181
NmeAIII GCCGAG 2 cut(s) 94, 100
NmuCI GTSAC 2 cut(s) 41, 292
NspI RCATGY 1 cut(s) 60
OliI CACNNNNGTG 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 26
PciI ACATGT 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 2 cut(s) 85, 88
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
PscI ACATGT 1 cut(s) 56
PspPI GGNCC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 278
SatI GCNGC 2 cut(s) 84, 87
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 64
SetI ASST 3 cut(s) 48, 217, 299
SfaNI GCATC 1 cut(s) 27
Sfr274I CTCGAG 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 1 cut(s) 153
SsiI CCGC 2 cut(s) 21, 83
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 27, 254
TasI AATT 1 cut(s) 153
TauI GCSGC 1 cut(s) 86
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 2 cut(s) 41, 292
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 2 cut(s) 41, 292
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 100
VneI GTGCAC 1 cut(s) 60
XceI RCATGY 1 cut(s) 60
XhoI CTCGAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.