Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016149.1

Orthogroup ID

OG0000863

Physical Location & Seq

Genomic Coordinates Reverse (-)

16070 .. 16435

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016149.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atggccaccgatccaaccaccgcgctagagatagcgatgtgcgacctcatggagacatgcgcacaggccgaggcggagcactcagcagccatggcgcctcactgggaggtcgaaaatatgacaaaccataatcgcatcctccgagaggcactccaacggcgagtcgcccataatgaagcactggacagagcccatcagcaagagaccccgataccaactatcagtagtgtcccgacaccaggagtagtgctcaccacagacccaggcactggcctcactggcaccttcgtgcctccaggccccacatcaggaagccccacgggccccacacctggcatgtcacgcgttcgaggaaaccctaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.82

Weight (kDa)

5.18

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000863)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29436 FvH4_4g08647
prunus_persica	Prupe.1G244600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora	Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii	Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa	Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	61
AccB1I	GGYRCC	2 cut(s)	94, 281
AccB7I	CCANNNNNTGG	1 cut(s)	269
AccII	CGCG	2 cut(s)	23, 345
AciI	CCGC	2 cut(s)	21, 74
AclWI	GGATC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	95
AfiI	CCNNNNNNNGG	5 cut(s)	145, 239, 269, 308, 332
AflIII	ACRYGT	1 cut(s)	343
AjnI	CCWGG	4 cut(s)	238, 262, 295, 331
AleI	CACNNNNGTG	1 cut(s)	287
Alw21I	GWGCWC	2 cut(s)	81, 252
Alw26I	GTCTC	2 cut(s)	47, 197
AlwI	GGATC	1 cut(s)	5
AlwNI	CAGNNNCTG	1 cut(s)	269
AoxI	GGCC	5 cut(s)	3, 66, 271, 298, 322
ApaI	GGGCCC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	86
AspLEI	GCGC	3 cut(s)	25, 62, 97
AspS9I	GGNCC	3 cut(s)	299, 322, 323
AsuHPI	GGTGA	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	94, 281
BanII	GRGCYC	2 cut(s)	193, 326
Bbv12I	GWGCWC	2 cut(s)	81, 252
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	201
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	4 cut(s)	240, 264, 297, 333
BcoDI	GTCTC	2 cut(s)	47, 197
BfaI	CTAG	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	98
BglI	GCCNNNNNGGC	2 cut(s)	279, 321
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	4 cut(s)	240, 264, 297, 333
BmgT120I	GGNCC	3 cut(s)	299, 322, 323
BmiI	GGNNCC	5 cut(s)	96, 283, 301, 324, 325
BmrFI	CCNGG	4 cut(s)	240, 264, 297, 333
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	144
BmuI	ACTGGG	1 cut(s)	112
BplI	GAGNNNNNCTC	4 cut(s)	135, 167, 234, 266
BpmI	CTGGAG	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	4 cut(s)	69, 90, 262, 318
Bsc4I	CCNNNNNNNGG	5 cut(s)	145, 239, 269, 308, 332
Bse1I	ACTGG	4 cut(s)	107, 186, 274, 283
BseBI	CCWGG	4 cut(s)	240, 264, 297, 333
BseDI	CCNNGG	4 cut(s)	69, 90, 262, 318
BseGI	GGATG	1 cut(s)	135
BseLI	CCNNNNNNNGG	5 cut(s)	145, 239, 269, 308, 332
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	4 cut(s)	107, 186, 274, 283
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	98
Bsh1236I	CGCG	2 cut(s)	23, 345
BshFI	GGCC	5 cut(s)	5, 68, 273, 300, 324
BshNI	GGYRCC	2 cut(s)	94, 281
BsiHKAI	GWGCWC	2 cut(s)	81, 252
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	5 cut(s)	145, 239, 269, 308, 332
BsmAI	GTCTC	2 cut(s)	47, 197
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	5 cut(s)	5, 68, 273, 300, 324
Bso31I	GGTCTC	1 cut(s)	197
Bsp120I	GGGCCC	1 cut(s)	322
Bsp1286I	GDGCHC	4 cut(s)	81, 193, 252, 326
Bsp143I	GATC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	90
BspACI	CCGC	2 cut(s)	21, 74
BspANI	GGCC	5 cut(s)	5, 68, 273, 300, 324
BspCNI	CTCAG	1 cut(s)	95
BspFNI	CGCG	2 cut(s)	23, 345
BspLI	GGNNCC	5 cut(s)	96, 283, 301, 324, 325
BspPI	GGATC	1 cut(s)	5
BspT107I	GGYRCC	2 cut(s)	94, 281
BspTNI	GGTCTC	1 cut(s)	197
BsrI	ACTGG	4 cut(s)	107, 186, 274, 283
BssECI	CCNNGG	4 cut(s)	69, 90, 262, 318
BssMI	GATC	1 cut(s)	10
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	4 cut(s)	240, 264, 297, 333
BstACI	GRCGYC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	82
BstDSI	CCRYGG	2 cut(s)	90, 318
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	135
BstFNI	CGCG	2 cut(s)	23, 345
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	3 cut(s)	25, 62, 97
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	2 cut(s)	47, 197
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 279, 321, 342
BstNI	CCWGG	4 cut(s)	240, 264, 297, 333
BstNSI	RCATGY	2 cut(s)	60, 340
BstSCI	CCNGG	4 cut(s)	238, 262, 295, 331
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	2 cut(s)	23, 345
BstV1I	GCAGC	1 cut(s)	98
BsuRI	GGCC	5 cut(s)	5, 68, 273, 300, 324
BtgI	CCRYGG	2 cut(s)	90, 318
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	135
BtsIMutI	CAGTG	4 cut(s)	100, 179, 267, 276
CaiI	CAGNNNCTG	1 cut(s)	269
CfoI	GCGC	3 cut(s)	25, 62, 97
Cfr13I	GGNCC	3 cut(s)	299, 322, 323
CviAII	CATG	4 cut(s)	49, 57, 91, 337
CviJI	RGCY	8 cut(s)	5, 68, 89, 191, 273, 300, 315, 324
CviKI_1	RGCY	8 cut(s)	5, 68, 89, 191, 273, 300, 315, 324
DdeI	CTNAG	1 cut(s)	82
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	90
Eco24I	GRGCYC	2 cut(s)	193, 326
Eco31I	GGTCTC	1 cut(s)	197
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	2 cut(s)	299, 323
EcoRII	CCWGG	4 cut(s)	238, 262, 295, 331
EcoT14I	CCWWGG	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	193, 326
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	4 cut(s)	52, 60, 94, 340
FaiI	YATR	7 cut(s)	50, 58, 92, 119, 129, 171, 338
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	4 cut(s)	48, 56, 90, 336
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	122
FriOI	GRGCYC	2 cut(s)	193, 326
Fsp4HI	GCNGC	1 cut(s)	87
FspAI	RTGCGCAY	1 cut(s)	61
FspBI	CTAG	1 cut(s)	26
FspI	TGCGCA	1 cut(s)	61
GlaI	GCGC	3 cut(s)	24, 61, 96
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	5 cut(s)	5, 68, 273, 300, 324
HhaI	GCGC	3 cut(s)	25, 62, 97
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	4 cut(s)	52, 60, 94, 340
Hin6I	GCGC	3 cut(s)	23, 60, 95
HinP1I	GCGC	3 cut(s)	23, 60, 95
HinfI	GANTC	1 cut(s)	162
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	232, 309
HpyAV	CCTTC	1 cut(s)	295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 279, 321, 342
HpyF3I	CTNAG	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	4 cut(s)	52, 60, 94, 340
HspAI	GCGC	3 cut(s)	23, 60, 95
KasI	GGCGCC	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MhlI	GDGCHC	4 cut(s)	81, 193, 252, 326
MlsI	TGGCCA	1 cut(s)	5
MluI	ACGCGT	1 cut(s)	343
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	171
MmeI	TCCRAC	2 cut(s)	38, 178
MnlI	CCTC	9 cut(s)	56, 64, 100, 108, 139, 149, 284, 303, 344
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	4 cut(s)	240, 264, 297, 333
MvaI	CCWGG	4 cut(s)	240, 264, 297, 333
MvnI	CGCG	2 cut(s)	23, 345
MwoI	GCNNNNNNNGC	4 cut(s)	92, 279, 321, 342
NarI	GGCGCC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	90
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	4 cut(s)	52, 60, 94, 340
NlaIV	GGNNCC	5 cut(s)	96, 283, 301, 324, 325
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	339
NsbI	TGCGCA	1 cut(s)	61
NspI	RCATGY	2 cut(s)	60, 340
OliI	CACNNNNGTG	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PflMI	CCANNNNNTGG	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	170
PluTI	GGCGCC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	170
Psp6I	CCWGG	4 cut(s)	238, 262, 295, 331
PspGI	CCWGG	4 cut(s)	238, 262, 295, 331
PspN4I	GGNNCC	5 cut(s)	96, 283, 301, 324, 325
PspOMI	GGGCCC	1 cut(s)	322
PspPI	GGNCC	3 cut(s)	299, 322, 323
PstNI	CAGNNNCTG	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	287
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	3 cut(s)	299, 322, 323
SchI	GAGTC	1 cut(s)	171
ScrFI	CCNGG	4 cut(s)	240, 264, 297, 333
SduI	GDGCHC	4 cut(s)	81, 193, 252, 326
SetI	ASST	4 cut(s)	48, 111, 287, 334
SfaNI	GCATC	1 cut(s)	144
SfoI	GGCGCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	287
SsiI	CCGC	2 cut(s)	21, 74
SspDI	GGCGCC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	4 cut(s)	238, 262, 295, 331
StyI	CCWWGG	1 cut(s)	90
TaqI	TCGA	2 cut(s)	111, 349
TscAI	CASTG	4 cut(s)	107, 186, 274, 283
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	4 cut(s)	107, 186, 274, 283
Van91I	CCANNNNNTGG	1 cut(s)	269
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	2 cut(s)	60, 340
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.