Rmu_sc0000367.1_g000181

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000367.1
OG0000863
Physical Location & Seq
Reverse (-)
872776 .. 873315
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000367.1_g000181.1.cds

Sequence Viewer

Length: 540 bp
atgacaacagatacaaccaccgcacttgagatagcgttgcgtgacctaatggagacacgcgcacaagttgaaacagagcacgtggcgaccgcggcagctcgccgagagattgagaacatgacaaaccagaatcgcatcctccgagaggcacttcagctgcgagtcgtgaataatgaggcattagacagggccagtcagcaggaaaccccgataccaactattggtggtgtctcgacacctatagccatcctcactaaggatctgagcatcagcctcgttggcacattcgtaacaccaagagcagaaacttctggaagccccatgggctctaccctaggcagcactagcgcgggaccacaagtgatttatctaaacttccctcttttctctaatcagctcggtacaaccccaccaccacaacccatacccgatatgataagagtgtcgggtacaaacacagctgcaaccaccaatatactgacacccgaacccaaaacccagttgttactccagatgagtgagactattgcatccctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.18

Weight (kDa)

4.86

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AccII CGCG 3 cut(s) 60, 92, 350
AciI CCGC 4 cut(s) 21, 90, 92, 350
AclWI GGATC 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 137
AcvI CACGTG 1 cut(s) 82
AfaI GTAC 2 cut(s) 403, 451
AfiI CCNNNNNNNGG 3 cut(s) 145, 221, 256
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 4 cut(s) 98, 157, 397, 461
AluI AGCT 4 cut(s) 98, 157, 397, 461
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 3 cut(s) 47, 235, 515
AlwI GGATC 1 cut(s) 267
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 4 cut(s) 95, 157, 339, 461
AspA2I CCTAGG 1 cut(s) 334
AspLEI GCGC 2 cut(s) 62, 350
AspS9I GGNCC 2 cut(s) 189, 353
AvaII GGWCC 1 cut(s) 353
AvrII CCTAGG 1 cut(s) 334
BanII GRGCYC 1 cut(s) 329
BbrPI CACGTG 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 4 cut(s) 107, 144, 351, 448
BccI CCATC 1 cut(s) 254
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BcoDI GTCTC 3 cut(s) 47, 235, 515
BfaI CTAG 2 cut(s) 335, 345
BfmI CTRYAG 2 cut(s) 240, 536
BglI GCCNNNNNGGC 2 cut(s) 279, 324
BisI GCNGC 5 cut(s) 93, 96, 158, 340, 462
BlnI CCTAGG 1 cut(s) 334
BlsI GCNGC 5 cut(s) 94, 97, 159, 341, 463
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 189, 353
BmiI GGNNCC 1 cut(s) 354
BmrI ACTGGG 1 cut(s) 493
BmsI GCATC 2 cut(s) 144, 276
BmuI ACTGGG 1 cut(s) 493
BpmI CTGGAG 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 90, 321, 334
Bsc4I CCNNNNNNNGG 3 cut(s) 145, 221, 256
Bse1I ACTGG 2 cut(s) 192, 499
BseDI CCNNGG 3 cut(s) 90, 321, 334
BseGI GGATG 3 cut(s) 135, 246, 530
BseLI CCNNNNNNNGG 3 cut(s) 145, 221, 256
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 192, 499
BseXI GCAGC 4 cut(s) 107, 144, 351, 448
Bsh1236I CGCG 3 cut(s) 60, 92, 350
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 81
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 3 cut(s) 145, 221, 256
BsmAI GTCTC 3 cut(s) 47, 235, 515
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 81, 329
Bsp143I GATC 1 cut(s) 259
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 4 cut(s) 21, 90, 92, 350
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 3 cut(s) 60, 92, 350
BspLI GGNNCC 1 cut(s) 354
BspPI GGATC 1 cut(s) 267
BsrI ACTGG 2 cut(s) 192, 499
BssECI CCNNGG 3 cut(s) 90, 321, 334
BssMI GATC 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 321, 334
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 2 cut(s) 255, 263
BstDSI CCRYGG 2 cut(s) 90, 321
BstENI CCTNNNNNAGG 2 cut(s) 143, 254
BstF5I GGATG 3 cut(s) 135, 246, 530
BstFNI CGCG 3 cut(s) 60, 92, 350
BstHHI GCGC 2 cut(s) 62, 350
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 3 cut(s) 47, 235, 515
BstMBI GATC 1 cut(s) 259
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 4 cut(s) 92, 279, 324, 345
BstSFI CTRYAG 2 cut(s) 240, 536
BstUI CGCG 3 cut(s) 60, 92, 350
BstV1I GCAGC 4 cut(s) 107, 144, 351, 448
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 2 cut(s) 90, 321
BtsCI GGATG 3 cut(s) 135, 246, 530
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 2 cut(s) 62, 350
Cfr13I GGNCC 2 cut(s) 189, 353
Cfr42I CCGCGG 1 cut(s) 93
Csp6I GTAC 2 cut(s) 402, 450
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 2 cut(s) 118, 322
CviJI RGCY 9 cut(s) 98, 157, 191, 245, 273, 318, 327, 397, 461
CviKI_1 RGCY 9 cut(s) 98, 157, 191, 245, 273, 318, 327, 397, 461
CviQI GTAC 2 cut(s) 402, 450
DdeI CTNAG 2 cut(s) 255, 263
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Eco130I CCWWGG 2 cut(s) 321, 334
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 137
Eco72I CACGTG 1 cut(s) 82
EcoNI CCTNNNNNAGG 2 cut(s) 143, 254
EcoT14I CCWWGG 2 cut(s) 321, 334
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 2 cut(s) 321, 334
FaeI CATG 2 cut(s) 121, 325
FaiI YATR 6 cut(s) 119, 242, 323, 425, 434, 476
FaqI GGGAC 1 cut(s) 366
FatI CATG 2 cut(s) 117, 321
FauI CCCGC 1 cut(s) 343
Fnu4HI GCNGC 5 cut(s) 93, 96, 158, 340, 462
FokI GGATG 3 cut(s) 122, 233, 517
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 5 cut(s) 93, 96, 158, 340, 462
FspBI CTAG 2 cut(s) 335, 345
GlaI GCGC 2 cut(s) 61, 349
GluI GCNGC 5 cut(s) 93, 96, 158, 340, 462
GsuI CTGGAG 1 cut(s) 494
HaeIII GGCC 1 cut(s) 191
HhaI GCGC 2 cut(s) 62, 350
Hin1II CATG 2 cut(s) 121, 325
Hin6I GCGC 2 cut(s) 60, 348
HinP1I GCGC 2 cut(s) 60, 348
HinfI GANTC 2 cut(s) 130, 162
Hpy188I TCNGA 2 cut(s) 143, 264
Hpy188III TCNNGA 4 cut(s) 166, 232, 312, 511
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 464, 530
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 279, 324, 345
HpyF3I CTNAG 2 cut(s) 255, 263
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 121, 325
HspAI GCGC 2 cut(s) 60, 348
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 1 cut(s) 259
LpnPI CCDG 7 cut(s) 140, 172, 185, 205, 297, 512, 524
Lsp1109I GCAGC 4 cut(s) 107, 144, 351, 448
LweI GCATC 2 cut(s) 144, 276
MaeI CTAG 2 cut(s) 335, 345
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 3 cut(s) 41, 289, 504
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 2 cut(s) 81, 329
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 6 cut(s) 139, 149, 169, 260, 284, 390
MspA1I CMGCKG 3 cut(s) 92, 157, 461
MvnI CGCG 3 cut(s) 60, 92, 350
MwoI GCNNNNNNNGC 4 cut(s) 92, 279, 324, 345
NcoI CCATGG 1 cut(s) 321
NdeII GATC 1 cut(s) 259
NlaIII CATG 2 cut(s) 121, 325
NlaIV GGNNCC 1 cut(s) 354
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PfeI GAWTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 5 cut(s) 94, 97, 159, 341, 463
PleI GAGTC 1 cut(s) 170
PmaCI CACGTG 1 cut(s) 82
PmlI CACGTG 1 cut(s) 82
PpsI GAGTC 1 cut(s) 170
Ppu21I YACGTR 1 cut(s) 82
PspCI CACGTG 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 2 cut(s) 189, 353
PsuI RGATCY 1 cut(s) 259
PvuII CAGCTG 2 cut(s) 157, 461
RsaI GTAC 2 cut(s) 403, 451
RsaNI GTAC 2 cut(s) 402, 450
SacII CCGCGG 1 cut(s) 93
SatI GCNGC 5 cut(s) 93, 96, 158, 340, 462
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 2 cut(s) 189, 353
SchI GAGTC 1 cut(s) 171
SduI GDGCHC 2 cut(s) 81, 329
SetI ASST 7 cut(s) 48, 84, 100, 159, 241, 399, 463
SfaNI GCATC 2 cut(s) 144, 276
SfcI CTRYAG 2 cut(s) 240, 536
Sfr303I CCGCGG 1 cut(s) 93
SgrBI CCGCGG 1 cut(s) 93
SinI GGWCC 1 cut(s) 353
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SsiI CCGC 4 cut(s) 21, 90, 92, 350
SspMI CTAG 2 cut(s) 335, 345
StyI CCWWGG 2 cut(s) 321, 334
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 233
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 1 cut(s) 130
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 4 cut(s) 95, 157, 339, 461
Tsp45I GTSAC 1 cut(s) 41
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 353
XagI CCTNNNNNAGG 2 cut(s) 143, 254
XmaJI CCTAGG 1 cut(s) 334
XspI CTAG 2 cut(s) 335, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.