Rroxscaffold_5G00374470

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000863
Physical Location & Seq
Forward (+)
55487904 .. 55493831
5928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374470.1

Sequence Viewer

Length: 411 bp
ATGTTCTATGGACCCAACAAGGACACGCCGATTGGTCCAATTGAGGAATTGATAGATGAGGAACACCGTCCATTGTATAGAAGCTATCACTATGCAGAGTTTCTTGAAGAATTCTTCATGCAAGAAGGAACAAGAAGGCTGGTGAAGGAAGGAACCATTTTCTCGTCAAAAGAATCCATTAGCAAGGAAAATAACACTTTCCTCACTATTAGGTTGGCGGAAAATTGTATCAACTCACAAAATGCTGAAAAGAAGTTGCATTTACACCACAATGCTTGGTCGAAGTATTTCATATCCCATGAAGATGAGATTGTAAGATCTGAGAAACTGAGGGAGCATGCCAAAATATTTGAAGAATTGAAGGAGGATGCCAAAAGAATGCAAGAATTGATTGCAAAATTTCCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

136

Amino Acids

16.2

Weight (kDa)

5.82

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 218
AcsI RAATTY 2 cut(s) 110, 398
AgsI TTSAA 3 cut(s) 107, 353, 361
AluBI AGCT 2 cut(s) 84, 407
AluI AGCT 2 cut(s) 84, 407
ApoI RAATTY 2 cut(s) 110, 398
Asp700I GAANNNNTTC 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 11, 35
AsuHPI GGTGA 1 cut(s) 154
AvaII GGWCC 2 cut(s) 11, 35
BglII AGATCT 1 cut(s) 317
Bme18I GGWCC 2 cut(s) 11, 35
BmgT120I GGNCC 2 cut(s) 11, 35
BmiI GGNNCC 2 cut(s) 13, 154
BmsI GCATC 1 cut(s) 358
BseGI GGATG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 312, 320
BsmI GAATGC 1 cut(s) 384
Bsp143I GATC 1 cut(s) 317
BspACI CCGC 1 cut(s) 218
BspCNI CTCAG 2 cut(s) 313, 321
BspLI GGNNCC 2 cut(s) 13, 154
BssMI GATC 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 321, 329
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 1 cut(s) 320
BstMBI GATC 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BtsCI GGATG 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 11, 35
CspCI CAANNNNNGTGG 2 cut(s) 257, 292
CviAII CATG 3 cut(s) 118, 299, 338
CviJI RGCY 3 cut(s) 84, 139, 407
CviKI_1 RGCY 3 cut(s) 84, 139, 407
DdeI CTNAG 2 cut(s) 321, 329
DpnI GATC 1 cut(s) 319
DpnII GATC 1 cut(s) 317
EciI GGCGGA 1 cut(s) 233
Eco47I GGWCC 2 cut(s) 11, 35
EcoRI GAATTC 1 cut(s) 110
FaeI CATG 3 cut(s) 121, 302, 341
FaiI YATR 7 cut(s) 9, 78, 93, 119, 293, 300, 339
FatI CATG 3 cut(s) 117, 298, 337
FokI GGATG 1 cut(s) 380
Hin1II CATG 3 cut(s) 121, 302, 341
HinfI GANTC 1 cut(s) 173
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 104
HpyAV CCTTC 5 cut(s) 119, 129, 139, 143, 355
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 5 cut(s) 95, 121, 259, 382, 395
HpyF3I CTNAG 2 cut(s) 321, 329
Hsp92II CATG 3 cut(s) 121, 302, 341
Kzo9I GATC 1 cut(s) 317
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 1 cut(s) 125
LweI GCATC 1 cut(s) 358
MalI GATC 1 cut(s) 319
MboI GATC 1 cut(s) 317
MboII GAAGA 4 cut(s) 106, 119, 314, 365
MfeI CAATTG 1 cut(s) 39
MflI RGATCY 1 cut(s) 317
MluCI AATT 7 cut(s) 39, 47, 110, 223, 356, 386, 398
MnlI CCTC 5 cut(s) 37, 52, 212, 324, 358
MroXI GAANNNNTTC 1 cut(s) 287
MseI TTAA 1 cut(s) 409
MslI CAYNNNNRTG 2 cut(s) 270, 303
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 384
NdeII GATC 1 cut(s) 317
NlaIII CATG 3 cut(s) 121, 302, 341
NlaIV GGNNCC 2 cut(s) 13, 154
NspI RCATGY 1 cut(s) 341
PaeI GCATGC 1 cut(s) 341
PctI GAATGC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 13, 154
PspPI GGNCC 2 cut(s) 11, 35
PsuI RGATCY 1 cut(s) 317
RseI CAYNNNNRTG 2 cut(s) 270, 303
SaqAI TTAA 1 cut(s) 409
Sau3AI GATC 1 cut(s) 317
Sau96I GGNCC 2 cut(s) 11, 35
SetI ASST 3 cut(s) 86, 215, 409
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 2 cut(s) 11, 35
SmiMI CAYNNNNRTG 2 cut(s) 270, 303
SphI GCATGC 1 cut(s) 341
Sse9I AATT 7 cut(s) 39, 47, 110, 223, 356, 386, 398
SsiI CCGC 1 cut(s) 218
SspI AATATT 1 cut(s) 348
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 281
TasI AATT 7 cut(s) 39, 47, 110, 223, 356, 386, 398
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 1 cut(s) 409
Tru9I TTAA 1 cut(s) 409
TspDTI ATGAA 3 cut(s) 106, 280, 315
VpaK11BI GGWCC 2 cut(s) 11, 35
XapI RAATTY 2 cut(s) 110, 398
XceI RCATGY 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.