Rmu_sc0005537.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005537.1
OG0000863
Physical Location & Seq
Forward (+)
13920 .. 14351
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005537.1_g000011.1.cds

Sequence Viewer

Length: 432 bp
atgaccactgacgtaaccactgcgctagaaatagagatgtgcgaccccatggagacacgtgcacaggccgaggctgagctcgcgacagccatggaggcttgccgagaggtcgaaaatatgacaaatcataatcgcatcctccgagaggtactccagctgcgagttgcgagcaacgaggcactagacagggctcgtcaacaggaaaccccgatatcgacaatcggtggtgtcccgacaccaggagtagtcctcagcacctacccaagcacgcgcctcgctggcacttttgtgccaccaacagtaacctatggaagccctacaagtcccatgccaagcagcaccagcaccggaccacaagtcatctacttgaattccccctactccccaatcaacttggcacagcgctaccacctcagcctgtccccgatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.52

Weight (kDa)

4.92

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 83, 271
AcsI RAATTY 1 cut(s) 370
AcvI CACGTG 1 cut(s) 59
AfaI GTAC 1 cut(s) 150
AfeI AGCGCT 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 145, 239
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 1 cut(s) 370
AhdI GACNNNNNGTC 1 cut(s) 356
AjnI CCWGG 1 cut(s) 238
AleI CACNNNNGTG 1 cut(s) 287
AluBI AGCT 2 cut(s) 79, 157
AluI AGCT 2 cut(s) 79, 157
Alw21I GWGCWC 2 cut(s) 64, 81
Alw26I GTCTC 1 cut(s) 47
Alw44I GTGCAC 1 cut(s) 60
Aor51HI AGCGCT 1 cut(s) 404
AoxI GGCC 1 cut(s) 66
ApaLI GTGCAC 1 cut(s) 60
ApeKI GCWGC 2 cut(s) 157, 336
ApoI RAATTY 1 cut(s) 370
AspLEI GCGC 3 cut(s) 25, 273, 405
AspS9I GGNCC 1 cut(s) 350
AvaII GGWCC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 64
BanII GRGCYC 2 cut(s) 81, 193
BbrPI CACGTG 1 cut(s) 59
Bbv12I GWGCWC 2 cut(s) 64, 81
BbvCI CCTCAGC 2 cut(s) 251, 413
BbvI GCAGC 2 cut(s) 144, 348
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciT130I CCWGG 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 2 cut(s) 26, 182
BfoI RGCGCY 1 cut(s) 406
BglI GCCNNNNNGGC 2 cut(s) 95, 279
BisI GCNGC 2 cut(s) 158, 337
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 2 cut(s) 159, 338
Bme1390I CCNGG 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 350
BmeRI GACNNNNNGTC 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 240
BmsI GCATC 1 cut(s) 144
BplI GAGNNNNNCTC 4 cut(s) 135, 167, 234, 266
BpmI CTGGAG 1 cut(s) 137
Bpu10I CCTNAGC 2 cut(s) 251, 413
Bpu1102I GCTNAGC 1 cut(s) 75
BsaAI YACGTR 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 48, 69, 90
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 239
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 3 cut(s) 48, 69, 90
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 145, 239
BseMII CTCAG 3 cut(s) 66, 265, 427
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 2 cut(s) 144, 348
Bsh1236I CGCG 2 cut(s) 83, 271
BshFI GGCC 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 64, 81
BsiSI CCGG 1 cut(s) 348
BslFI GGGAC 3 cut(s) 215, 309, 406
BslI CCNNNNNNNGG 2 cut(s) 145, 239
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 3 cut(s) 215, 309, 406
BsnI GGCC 1 cut(s) 68
Bsp1286I GDGCHC 3 cut(s) 64, 81, 193
Bsp1720I GCTNAGC 1 cut(s) 75
Bsp19I CCATGG 2 cut(s) 48, 90
Bsp68I TCGCGA 1 cut(s) 83
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 3 cut(s) 67, 264, 426
BspFNI CGCG 2 cut(s) 83, 271
BssECI CCNNGG 3 cut(s) 48, 69, 90
BssT1I CCWWGG 2 cut(s) 48, 90
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 301
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 5 cut(s) 81, 100, 169, 269, 280
BstDEI CTNAG 3 cut(s) 75, 251, 413
BstDSI CCRYGG 2 cut(s) 48, 90
BstENI CCTNNNNNAGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 2 cut(s) 83, 271
BstH2I RGCGCY 1 cut(s) 406
BstHHI GCGC 3 cut(s) 25, 273, 405
BstMAI GTCTC 1 cut(s) 47
BstMWI GCNNNNNNNGC 4 cut(s) 80, 95, 279, 342
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 2 cut(s) 83, 271
BstV1I GCAGC 2 cut(s) 144, 348
BsuRI GGCC 1 cut(s) 68
BtgI CCRYGG 2 cut(s) 48, 90
BtsCI GGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 6, 18
BtuMI TCGCGA 1 cut(s) 83
Cac8I GCNNGC 5 cut(s) 81, 100, 169, 269, 280
CfoI GCGC 3 cut(s) 25, 273, 405
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 149
CviAII CATG 3 cut(s) 49, 91, 328
CviJI RGCY 9 cut(s) 68, 74, 79, 89, 98, 157, 191, 315, 417
CviKI_1 RGCY 9 cut(s) 68, 74, 79, 89, 98, 157, 191, 315, 417
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 3 cut(s) 75, 251, 413
DriI GACNNNNNGTC 1 cut(s) 356
Eam1105I GACNNNNNGTC 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 79
Eco130I CCWWGG 2 cut(s) 48, 90
Eco24I GRGCYC 2 cut(s) 81, 193
Eco32I GATATC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 350
Eco47III AGCGCT 1 cut(s) 404
Eco53kI GAGCTC 1 cut(s) 79
Eco72I CACGTG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 79
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoRI GAATTC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 238
EcoRV GATATC 1 cut(s) 213
EcoT14I CCWWGG 2 cut(s) 48, 90
EcoT38I GRGCYC 2 cut(s) 81, 193
ErhI CCWWGG 2 cut(s) 48, 90
FaeI CATG 3 cut(s) 52, 94, 331
FaiI YATR 7 cut(s) 50, 92, 119, 129, 309, 329, 430
FaqI GGGAC 3 cut(s) 215, 309, 406
FatI CATG 3 cut(s) 48, 90, 327
Fnu4HI GCNGC 2 cut(s) 158, 337
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 2 cut(s) 81, 193
Fsp4HI GCNGC 2 cut(s) 158, 337
FspBI CTAG 2 cut(s) 26, 182
GlaI GCGC 3 cut(s) 24, 272, 404
GluI GCNGC 2 cut(s) 158, 337
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 406
HaeIII GGCC 1 cut(s) 68
HapII CCGG 1 cut(s) 348
HhaI GCGC 3 cut(s) 25, 273, 405
Hin1II CATG 3 cut(s) 52, 94, 331
Hin6I GCGC 3 cut(s) 23, 271, 403
HinP1I GCGC 3 cut(s) 23, 271, 403
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HpaII CCGG 1 cut(s) 348
Hpy166II GTNNAC 2 cut(s) 62, 197
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 2 cut(s) 82, 232
Hpy8I GTNNAC 2 cut(s) 62, 197
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 2 cut(s) 12, 58
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 95, 279, 342
HpyF3I CTNAG 3 cut(s) 75, 251, 413
HpySE526I ACGT 2 cut(s) 12, 58
Hsp92II CATG 3 cut(s) 52, 94, 331
HspAI GCGC 3 cut(s) 23, 271, 403
LpnPI CCDG 9 cut(s) 50, 167, 172, 185, 225, 252, 264, 355, 361
Lsp1109I GCAGC 2 cut(s) 144, 348
LweI GCATC 1 cut(s) 144
MaeI CTAG 2 cut(s) 26, 182
MaeII ACGT 2 cut(s) 12, 58
MaeIII GTNAC 2 cut(s) 13, 301
MhlI GDGCHC 3 cut(s) 64, 81, 193
MluCI AATT 1 cut(s) 370
MnlI CCTC 9 cut(s) 64, 88, 100, 139, 149, 169, 260, 284, 422
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 157
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
MvnI CGCG 2 cut(s) 83, 271
MwoI GCNNNNNNNGC 4 cut(s) 80, 95, 279, 342
NcoI CCATGG 2 cut(s) 48, 90
NlaIII CATG 3 cut(s) 52, 94, 331
NmeAIII GCCGAG 2 cut(s) 94, 128
NruI TCGCGA 1 cut(s) 83
OliI CACNNNNGTG 1 cut(s) 287
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PkrI GCNGC 2 cut(s) 159, 338
PmaCI CACGTG 1 cut(s) 59
PmlI CACGTG 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 238
PspCI CACGTG 1 cut(s) 59
PspGI CCWGG 1 cut(s) 238
PspPI GGNCC 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 157
RruI TCGCGA 1 cut(s) 83
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 287
SacI GAGCTC 1 cut(s) 81
SatI GCNGC 2 cut(s) 158, 337
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 240
SduI GDGCHC 3 cut(s) 64, 81, 193
SetI ASST 9 cut(s) 15, 61, 81, 111, 150, 159, 260, 308, 414
SfaNI GCATC 1 cut(s) 144
SinI GGWCC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 1 cut(s) 370
SspMI CTAG 2 cut(s) 26, 182
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 238
StyI CCWWGG 2 cut(s) 48, 90
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 2 cut(s) 15, 61
TaqI TCGA 2 cut(s) 111, 215
TasI AATT 1 cut(s) 370
TscAI CASTG 2 cut(s) 13, 25
TseI GCWGC 2 cut(s) 157, 336
TspRI CASTG 2 cut(s) 13, 25
VneI GTGCAC 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 350
XagI CCTNNNNNAGG 1 cut(s) 143
XapI RAATTY 1 cut(s) 370
XspI CTAG 2 cut(s) 26, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.