Rmu_co8097010.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8097010.1
OG0000863
Physical Location & Seq
Forward (+)
1 .. 499
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8097010.1_g000001.1.cds

Sequence Viewer

Length: 446 bp
aatcgcaccttacgagaagcactccagcggcgaatcggcattacgacgtcttggacagggctcatcagcaggagaccccgatactgaccattgacggtgtccccacacagggaccagccctcaccgcggacccctccactagcatcgctggcaccttcgtgcccccaaatctcatgtcgggaagcctcactggccccacacacagcaacaccagcgtggacccacaggtgatctacctaaattccccacttattctagggcaccttggccccgcaccaatttcccaaccgactgcagatatggttggcacctcgggtacaaacaccgctgcgaccgccaacataattccaccctatcccaacactcggctgttgctccatataagcgaggccattgcatctttgcaggcacgagtagagagcgctgagagcagagccgggtggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

15.33

Weight (kDa)

5.76

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 50
AccB1I GGYRCC 3 cut(s) 151, 260, 307
AccII CGCG 1 cut(s) 127
AciI CCGC 6 cut(s) 28, 125, 127, 272, 326, 335
AcsI RAATTY 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 1 cut(s) 318
AfeI AGCGCT 1 cut(s) 423
AfiI CCNNNNNNNGG 4 cut(s) 108, 109, 126, 365
AleI CACNNNNGTG 2 cut(s) 157, 214
Alw26I GTCTC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 312
Aor51HI AGCGCT 1 cut(s) 423
AoxI GGCC 3 cut(s) 192, 267, 389
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 240
ArsI GACNNNNNNTTYG 2 cut(s) 160, 192
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 5 cut(s) 112, 129, 193, 219, 268
AsuC2I CCSGG 1 cut(s) 438
AsuHPI GGTGA 2 cut(s) 114, 240
AvaI CYCGRG 1 cut(s) 312
AvaII GGWCC 3 cut(s) 112, 129, 219
BaeGI GKGCMC 2 cut(s) 164, 263
BanI GGYRCC 3 cut(s) 151, 260, 307
BanII GRGCYC 1 cut(s) 63
BauI CACGAG 1 cut(s) 410
BbvI GCAGC 1 cut(s) 315
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 2 cut(s) 140, 256
BfmI CTRYAG 1 cut(s) 293
BfoI RGCGCY 1 cut(s) 425
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 2 cut(s) 29, 329
BlsI GCNGC 2 cut(s) 30, 330
Bme1390I CCNGG 1 cut(s) 438
Bme18I GGWCC 3 cut(s) 112, 129, 219
BmeT110I CYCGRG 1 cut(s) 312
BmgT120I GGNCC 5 cut(s) 112, 129, 193, 219, 268
BmiI GGNNCC 8 cut(s) 113, 131, 153, 195, 221, 262, 270, 309
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 2 cut(s) 152, 406
BplI GAGNNNNNCTC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 125, 264, 311
Bsc4I CCNNNNNNNGG 4 cut(s) 108, 109, 126, 365
Bse1I ACTGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 392
BseDI CCNNGG 3 cut(s) 125, 264, 311
BseLI CCNNNNNNNGG 4 cut(s) 108, 109, 126, 365
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 195
BseSI GKGCMC 2 cut(s) 164, 263
BseXI GCAGC 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 127
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 3 cut(s) 194, 269, 391
BshNI GGYRCC 3 cut(s) 151, 260, 307
BsiEI CGRYCG 1 cut(s) 335
BsiHKCI CYCGRG 1 cut(s) 312
BsiSI CCGG 1 cut(s) 437
BslFI GGGAC 2 cut(s) 85, 125
BslI CCNNNNNNNGG 4 cut(s) 108, 109, 126, 365
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 2 cut(s) 85, 125
BsnI GGCC 3 cut(s) 194, 269, 391
Bso31I GGTCTC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 312
Bsp1286I GDGCHC 3 cut(s) 63, 164, 263
Bsp143I GATC 1 cut(s) 230
BspACI CCGC 6 cut(s) 28, 125, 127, 272, 326, 335
BspANI GGCC 3 cut(s) 194, 269, 391
BspCNI CTCAG 1 cut(s) 417
BspFNI CGCG 1 cut(s) 127
BspLI GGNNCC 8 cut(s) 113, 131, 153, 195, 221, 262, 270, 309
BspMAI CTGCAG 1 cut(s) 297
BspT107I GGYRCC 3 cut(s) 151, 260, 307
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 392
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 3 cut(s) 125, 264, 311
BssMI GATC 1 cut(s) 230
BssNI GRCGYC 1 cut(s) 47
BssSI CACGAG 1 cut(s) 410
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 410
Bst4CI ACNGT 1 cut(s) 97
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 150, 407
BstDEI CTNAG 1 cut(s) 425
BstDSI CCRYGG 1 cut(s) 125
BstFNI CGCG 1 cut(s) 127
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 1 cut(s) 233
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 1 cut(s) 230
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 6 cut(s) 124, 149, 191, 212, 334, 428
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 293
BstSLI GKGCMC 2 cut(s) 164, 263
BstUI CGCG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 315
BsuRI GGCC 3 cut(s) 194, 269, 391
BtgI CCRYGG 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 2 cut(s) 150, 407
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 5 cut(s) 112, 129, 193, 219, 268
Cfr42I CCGCGG 1 cut(s) 128
Csp6I GTAC 1 cut(s) 317
CviAII CATG 1 cut(s) 174
CviJI RGCY 8 cut(s) 61, 118, 185, 194, 269, 369, 391, 436
CviKI_1 RGCY 8 cut(s) 61, 118, 185, 194, 269, 369, 391, 436
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 1 cut(s) 425
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 3 cut(s) 112, 129, 219
Eco47III AGCGCT 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 177
FaiI YATR 5 cut(s) 175, 301, 343, 380, 382
FaqI GGGAC 2 cut(s) 85, 125
FatI CATG 1 cut(s) 173
FauI CCCGC 1 cut(s) 279
Fnu4HI GCNGC 2 cut(s) 29, 329
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 29, 329
FspBI CTAG 2 cut(s) 140, 256
GlaI GCGC 1 cut(s) 423
GluI GCNGC 2 cut(s) 29, 329
GsuI CTGGAG 1 cut(s) 8
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 3 cut(s) 194, 269, 391
HapII CCGG 1 cut(s) 437
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 177
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 1 cut(s) 33
HpaII CCGG 1 cut(s) 437
HphI GGTGA 2 cut(s) 114, 240
Hpy166II GTNNAC 1 cut(s) 219
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 3 cut(s) 295, 397, 405
HpyF10VI GCNNNNNNNGC 6 cut(s) 124, 149, 191, 212, 334, 428
HpyF3I CTNAG 1 cut(s) 425
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 177
HspAI GCGC 1 cut(s) 422
KspI CCGCGG 1 cut(s) 128
Kzo9I GATC 1 cut(s) 230
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 1 cut(s) 315
LweI GCATC 2 cut(s) 152, 406
MaeI CTAG 2 cut(s) 140, 256
MaeII ACGT 1 cut(s) 47
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MhlI GDGCHC 3 cut(s) 63, 164, 263
MluCI AATT 3 cut(s) 240, 278, 344
MnlI CCTC 5 cut(s) 130, 144, 196, 321, 381
MslI CAYNNNNRTG 2 cut(s) 157, 214
MspA1I CMGCKG 3 cut(s) 28, 127, 328
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 127
MwoI GCNNNNNNNGC 6 cut(s) 124, 149, 191, 212, 334, 428
NciI CCSGG 1 cut(s) 438
NdeII GATC 1 cut(s) 230
NlaIII CATG 1 cut(s) 177
NlaIV GGNNCC 8 cut(s) 113, 131, 153, 195, 221, 262, 270, 309
NmeAIII GCCGAG 1 cut(s) 345
OliI CACNNNNGTG 2 cut(s) 157, 214
PcsI WCGNNNNNNNCGW 1 cut(s) 10
PfeI GAWTC 1 cut(s) 33
PflFI GACNNNGTC 1 cut(s) 97
PkrI GCNGC 2 cut(s) 30, 330
PspN4I GGNNCC 8 cut(s) 113, 131, 153, 195, 221, 262, 270, 309
PspPI GGNCC 5 cut(s) 112, 129, 193, 219, 268
PstI CTGCAG 1 cut(s) 297
PsyI GACNNNGTC 1 cut(s) 97
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 2 cut(s) 157, 214
SacII CCGCGG 1 cut(s) 128
SatI GCNGC 2 cut(s) 29, 329
Sau3AI GATC 1 cut(s) 230
Sau96I GGNCC 5 cut(s) 112, 129, 193, 219, 268
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 3 cut(s) 63, 164, 263
SetI ASST 7 cut(s) 11, 50, 157, 230, 239, 266, 313
SfaNI GCATC 2 cut(s) 152, 406
SfcI CTRYAG 1 cut(s) 293
Sfr303I CCGCGG 1 cut(s) 128
SgrBI CCGCGG 1 cut(s) 128
SinI GGWCC 3 cut(s) 112, 129, 219
SmiMI CAYNNNNRTG 2 cut(s) 157, 214
Sse9I AATT 3 cut(s) 240, 278, 344
SsiI CCGC 6 cut(s) 28, 125, 127, 272, 326, 335
SspMI CTAG 2 cut(s) 140, 256
StyD4I CCNGG 1 cut(s) 436
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 97
TaiI ACGT 1 cut(s) 50
TasI AATT 3 cut(s) 240, 278, 344
TauI GCSGC 1 cut(s) 31
TfiI GAWTC 1 cut(s) 33
TscAI CASTG 1 cut(s) 195
TseI GCWGC 1 cut(s) 328
TspRI CASTG 1 cut(s) 195
Tth111I GACNNNGTC 1 cut(s) 97
VpaK11BI GGWCC 3 cut(s) 112, 129, 219
XapI RAATTY 1 cut(s) 240
XspI CTAG 2 cut(s) 140, 256
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.