Rmu_sc0006695.1_g000056

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006695.1
OG0000863
Physical Location & Seq
Forward (+)
249832 .. 250089
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006695.1_g000056.1.cds

Sequence Viewer

Length: 258 bp
atggctaccagcactctcgctaccaataatgtctatcagccccaagaagtagcaacccgcgaggtccagctcacgctcgaattcatgagcccgaacaccgaggcactctcagccatgacgacagatgcaaccaccgtactcgagatagcaatgcgtgacctcataaagacacgcgtacaagctgaaatcgagcgcgtggcggccgcggaagctcgtcgagagattgagaacatgacaaaccaaaattgcatcctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.47

Weight (kDa)

4.55

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 60, 174, 195, 206
AciI CCGC 4 cut(s) 58, 200, 204, 206
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 2 cut(s) 138, 177
AflIII ACRYGT 1 cut(s) 172
AluBI AGCT 3 cut(s) 70, 182, 212
AluI AGCT 3 cut(s) 70, 182, 212
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 201
ApoI RAATTY 1 cut(s) 80
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 64
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 92
BisI GCNGC 2 cut(s) 201, 204
BlsI GCNGC 2 cut(s) 202, 205
Bme18I GGWCC 1 cut(s) 64
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 64
BmsI GCATC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BsaJI CCNNGG 2 cut(s) 99, 204
Bse3DI GCAATG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 99, 204
BseGI GGATG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 123
BseX3I CGGCCG 1 cut(s) 201
Bsh1236I CGCG 4 cut(s) 60, 174, 195, 206
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 140
BsnI GGCC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 92
BspACI CCGC 4 cut(s) 58, 200, 204, 206
BspANI GGCC 1 cut(s) 203
BspCNI CTCAG 1 cut(s) 122
BspFNI CGCG 4 cut(s) 60, 174, 195, 206
BspHI TCATGA 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 156
BssECI CCNNGG 2 cut(s) 99, 204
Bst4CI ACNGT 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 109
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 249
BstFNI CGCG 4 cut(s) 60, 174, 195, 206
BstHHI GCGC 1 cut(s) 195
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 110, 209
BstUI CGCG 4 cut(s) 60, 174, 195, 206
BstZI CGGCCG 1 cut(s) 201
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 249
CciI TCATGA 1 cut(s) 84
CciNI GCGGCCGC 1 cut(s) 201
CfoI GCGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 64
Cfr42I CCGCGG 1 cut(s) 207
Csp6I GTAC 2 cut(s) 137, 176
CviAII CATG 3 cut(s) 85, 115, 232
CviJI RGCY 8 cut(s) 5, 40, 70, 90, 113, 182, 203, 212
CviKI_1 RGCY 8 cut(s) 5, 40, 70, 90, 113, 182, 203, 212
CviQI GTAC 2 cut(s) 137, 176
DdeI CTNAG 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 201
EagI CGGCCG 1 cut(s) 201
EclXI CGGCCG 1 cut(s) 201
Eco24I GRGCYC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 64
Eco52I CGGCCG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 92
FaeI CATG 3 cut(s) 88, 118, 235
FaiI YATR 4 cut(s) 86, 116, 164, 233
FatI CATG 3 cut(s) 84, 114, 231
FauI CCCGC 1 cut(s) 65
Fnu4HI GCNGC 2 cut(s) 201, 204
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 2 cut(s) 201, 204
GlaI GCGC 1 cut(s) 194
GluI GCNGC 2 cut(s) 201, 204
HaeIII GGCC 1 cut(s) 203
HhaI GCGC 1 cut(s) 195
Hin1II CATG 3 cut(s) 88, 118, 235
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 3 cut(s) 85, 142, 218
Hpy99I CGWCG 1 cut(s) 219
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 2 cut(s) 128, 249
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 209
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 3 cut(s) 88, 118, 235
HspAI GCGC 1 cut(s) 193
KspI CCGCGG 1 cut(s) 207
LpnPI CCDG 2 cut(s) 22, 80
LweI GCATC 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 2 cut(s) 80, 244
MluI ACGCGT 1 cut(s) 172
MnlI CCTC 3 cut(s) 55, 94, 170
MspA1I CMGCKG 1 cut(s) 206
MvnI CGCG 4 cut(s) 60, 174, 195, 206
MwoI GCNNNNNNNGC 2 cut(s) 110, 209
NlaIII CATG 3 cut(s) 88, 118, 235
NmuCI GTSAC 1 cut(s) 155
NotI GCGGCCGC 1 cut(s) 201
PaeR7I CTCGAG 1 cut(s) 140
PagI TCATGA 1 cut(s) 84
PkrI GCNGC 2 cut(s) 202, 205
PspPI GGNCC 1 cut(s) 64
RsaI GTAC 2 cut(s) 138, 177
RsaNI GTAC 2 cut(s) 137, 176
SacII CCGCGG 1 cut(s) 207
SatI GCNGC 2 cut(s) 201, 204
Sau96I GGNCC 1 cut(s) 64
SduI GDGCHC 1 cut(s) 92
SetI ASST 5 cut(s) 66, 72, 162, 184, 214
SfaNI GCATC 1 cut(s) 115
Sfr274I CTCGAG 1 cut(s) 140
Sfr303I CCGCGG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 207
SinI GGWCC 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 2 cut(s) 80, 244
SsiI CCGC 4 cut(s) 58, 200, 204, 206
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 4 cut(s) 78, 141, 189, 217
TasI AATT 2 cut(s) 80, 244
TauI GCSGC 2 cut(s) 203, 206
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.