Rmu_sc0000706.1_g000036

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000706.1
OG0000863
Physical Location & Seq
Reverse (-)
143298 .. 143810
513 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000706.1_g000036.1.cds

Sequence Viewer

Length: 513 bp
atgacaaaccagaatcgcgttctccgggaggcactccagcggctaattgcaaaaaacgaagcattagacagggcccgtcaacaggaaaccttgataccaacaatagatggtgtcccgacacccggagcagtcctcaccacagacccaagcactggtctcgcgggcacttttgtaccaccaagcgtcacctctggaagtcccaccggccttactccaagcagctccagcaccggaccacaagtaatctacttgaactcccttcttctccccactcaactcggcacagcacccctacctcagcctgccaccgacatagcgggaacatcagaaacaaacatagctgcaaccgccaacatacctctactaggccctaacactcggttattgctccaaatgagtgaaaccatctcctccctacaagcacggattgaaagtgccgagagtagaacctgctggcaaccaattacggctggcttcaagggaaagataggatcattcacctcccagatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

17.76

Weight (kDa)

6.22

Isoelectric Point (pI)

51.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 458
AccB7I CCANNNNNTGG 1 cut(s) 152
AccII CGCG 2 cut(s) 18, 161
AciI CCGC 4 cut(s) 40, 161, 317, 348
AclWI GGATC 1 cut(s) 499
AfaI GTAC 1 cut(s) 174
AfiI CCNNNNNNNGG 4 cut(s) 82, 122, 152, 365
AgsI TTSAA 3 cut(s) 253, 431, 478
AluBI AGCT 2 cut(s) 222, 341
AluI AGCT 2 cut(s) 222, 341
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 1 cut(s) 499
AoxI GGCC 3 cut(s) 72, 205, 367
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 219, 341
AspS9I GGNCC 4 cut(s) 72, 73, 233, 368
AsuC2I CCSGG 2 cut(s) 26, 123
AsuHPI GGTGA 3 cut(s) 127, 178, 490
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 2 cut(s) 76, 167
BaeI ACNNNNGTAYC 2 cut(s) 156, 189
BanII GRGCYC 1 cut(s) 76
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 2 cut(s) 231, 328
BccI CCATC 2 cut(s) 101, 413
BceAI ACGGC 1 cut(s) 483
BcgI CGANNNNNNTGC 2 cut(s) 139, 173
BcnI CCSGG 2 cut(s) 26, 123
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 365
BfuAI ACCTGC 1 cut(s) 458
BisI GCNGC 3 cut(s) 41, 220, 342
BlsI GCNGC 3 cut(s) 42, 221, 343
Bme1390I CCNGG 2 cut(s) 26, 123
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 4 cut(s) 72, 73, 233, 368
BmiI GGNNCC 1 cut(s) 74
BmrFI CCNGG 2 cut(s) 26, 123
BplI GAGNNNNNCTC 2 cut(s) 117, 149
BpmI CTGGAG 2 cut(s) 20, 208
Bpu10I CCTNAGC 1 cut(s) 297
BpuMI CCSGG 2 cut(s) 26, 123
BsaI GGTCTC 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 122, 152, 365
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 157
BseLI CCNNNNNNNGG 4 cut(s) 82, 122, 152, 365
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 400
BseSI GKGCMC 2 cut(s) 76, 167
BseXI GCAGC 2 cut(s) 231, 328
Bsh1236I CGCG 2 cut(s) 18, 161
BshFI GGCC 3 cut(s) 74, 207, 369
BsiSI CCGG 4 cut(s) 25, 123, 204, 231
BslFI GGGAC 2 cut(s) 98, 183
BslI CCNNNNNNNGG 4 cut(s) 82, 122, 152, 365
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 2 cut(s) 98, 183
BsnI GGCC 3 cut(s) 74, 207, 369
Bso31I GGTCTC 1 cut(s) 161
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 76, 167
Bsp143I GATC 1 cut(s) 491
BspACI CCGC 4 cut(s) 40, 161, 317, 348
BspANI GGCC 3 cut(s) 74, 207, 369
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 2 cut(s) 18, 161
BspLI GGNNCC 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 499
BspTNI GGTCTC 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 203
BssMI GATC 1 cut(s) 491
BstC8I GCNNGC 4 cut(s) 163, 303, 455, 472
BstDEI CTNAG 1 cut(s) 297
BstENI CCTNNNNNAGG 1 cut(s) 363
BstFNI CGCG 2 cut(s) 18, 161
BstKTI GATC 1 cut(s) 494
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 1 cut(s) 491
BstMWI GCNNNNNNNGC 2 cut(s) 225, 347
BstSCI CCNGG 2 cut(s) 24, 121
BstSLI GKGCMC 2 cut(s) 76, 167
BstUI CGCG 2 cut(s) 18, 161
BstV1I GCAGC 2 cut(s) 231, 328
BsuRI GGCC 3 cut(s) 74, 207, 369
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 4 cut(s) 163, 303, 455, 472
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 4 cut(s) 72, 73, 233, 368
CseI GACGC 1 cut(s) 172
Csp6I GTAC 1 cut(s) 173
CviJI RGCY 9 cut(s) 43, 74, 207, 222, 301, 341, 369, 470, 474
CviKI_1 RGCY 9 cut(s) 43, 74, 207, 222, 301, 341, 369, 470, 474
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 1 cut(s) 297
DpnI GATC 1 cut(s) 493
DpnII GATC 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 233
EcoNI CCTNNNNNAGG 1 cut(s) 363
EcoO109I RGGNCCY 2 cut(s) 72, 368
EcoT38I GRGCYC 1 cut(s) 76
FaiI YATR 4 cut(s) 314, 338, 356, 511
FaqI GGGAC 2 cut(s) 98, 183
FauI CCCGC 2 cut(s) 154, 310
Fnu4HI GCNGC 3 cut(s) 41, 220, 342
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 3 cut(s) 41, 220, 342
FspBI CTAG 1 cut(s) 365
GluI GCNGC 3 cut(s) 41, 220, 342
GsuI CTGGAG 2 cut(s) 20, 208
HaeIII GGCC 3 cut(s) 74, 207, 369
HapII CCGG 4 cut(s) 25, 123, 204, 231
HgaI GACGC 1 cut(s) 172
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HinfI GANTC 1 cut(s) 13
HpaII CCGG 4 cut(s) 25, 123, 204, 231
HphI GGTGA 3 cut(s) 127, 178, 490
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 2 cut(s) 115, 192
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 269
HpyCH4V TGCA 2 cut(s) 50, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 347
HpyF3I CTNAG 1 cut(s) 297
Kzo9I GATC 1 cut(s) 491
LmnI GCTCC 3 cut(s) 125, 227, 393
Lsp1109I GCAGC 2 cut(s) 231, 328
MaeI CTAG 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 184
MalI GATC 1 cut(s) 493
MboI GATC 1 cut(s) 491
MboII GAAGA 1 cut(s) 254
MhlI GDGCHC 2 cut(s) 76, 167
MluCI AATT 2 cut(s) 45, 462
MnlI CCTC 7 cut(s) 22, 143, 199, 306, 369, 421, 511
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 4 cut(s) 25, 123, 204, 231
MspR9I CCNGG 2 cut(s) 26, 123
MvnI CGCG 2 cut(s) 18, 161
MwoI GCNNNNNNNGC 2 cut(s) 225, 347
NciI CCSGG 2 cut(s) 26, 123
NdeII GATC 1 cut(s) 491
NlaIV GGNNCC 1 cut(s) 74
NmeAIII GCCGAG 2 cut(s) 258, 463
NmuCI GTSAC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 3 cut(s) 42, 221, 343
PspN4I GGNNCC 1 cut(s) 74
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 4 cut(s) 72, 73, 233, 368
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SatI GCNGC 3 cut(s) 41, 220, 342
Sau3AI GATC 1 cut(s) 491
Sau96I GGNCC 4 cut(s) 72, 73, 233, 368
ScrFI CCNGG 2 cut(s) 26, 123
SduI GDGCHC 2 cut(s) 76, 167
SetI ASST 8 cut(s) 92, 191, 224, 298, 343, 361, 452, 503
SinI GGWCC 1 cut(s) 233
Sse9I AATT 2 cut(s) 45, 462
SsiI CCGC 4 cut(s) 40, 161, 317, 348
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 2 cut(s) 24, 121
TasI AATT 2 cut(s) 45, 462
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 13
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 219, 341
Tsp45I GTSAC 1 cut(s) 184
TspGWI ACGGA 1 cut(s) 439
TspRI CASTG 1 cut(s) 157
Van91I CCANNNNNTGG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 233
XagI CCTNNNNNAGG 1 cut(s) 363
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.