Rmu_sc0006822.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006822.1
OG0000863
Physical Location & Seq
Reverse (-)
24361 .. 25361
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006822.1_g000010.1.cds

Sequence Viewer

Length: 753 bp
atgttggtatacatatacctcataggcacaagtattggaagcacaagactcatatcgccaatacaaaaggaaagttcccagctgaaggcctcgatacccatccgagcgatatcgggaaagctcccagctgagggtccccataccccccgaggcgatatcgggaaccccgatcgttctacactgaaagaaacaggaccaagctcccacaaacttgctacattaaggtcatctccaacaacccaaagagacacgtgcacagaccgaggcctagcgcgctgcagctatggcagctcgctgagaagtggaaaatatgacaaacaagaatcgcattctttaggaggcgctccagcggcgagttgcgaacaacaaggcattggacagggccggtcaacaggaaacccagataccgataattggtggtgtcccgacacccagagcagtcctcaccacagacccaaacactggcctcgcagcaccatcgctagaccacaagtaatctacttgaccttccctctcctccctaatcaactcggcacaacgccaccacctcagcctgcccctgatatggcgggaccctcggacactaacacagctggaaccgccaacatacctctacctgaccacaatactcggttgttgctccaaatgagcgaaaccatcccctcattgcaagcgcggattgagagcgccgaaagcaggactggttggcatccagggaaagatgggaccattcactccccggatacaggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

26.83

Weight (kDa)

8.95

Isoelectric Point (pI)

55.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 462
AccI GTMKAC 1 cut(s) 9
AccII CGCG 2 cut(s) 274, 676
AciI CCGC 4 cut(s) 350, 569, 600, 676
AcuI CTGAAG 1 cut(s) 104
AcvI CACGTG 1 cut(s) 252
AfiI CCNNNNNNNGG 8 cut(s) 85, 130, 131, 414, 462, 565, 696, 746
AflIII ACRYGT 1 cut(s) 249
AjnI CCWGG 1 cut(s) 712
AluBI AGCT 7 cut(s) 82, 121, 128, 201, 282, 291, 593
AluI AGCT 7 cut(s) 82, 121, 128, 201, 282, 291, 593
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 240
Alw44I GTGCAC 1 cut(s) 253
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 4 cut(s) 87, 265, 382, 464
ApaLI GTGCAC 1 cut(s) 253
ApeKI GCWGC 4 cut(s) 276, 279, 288, 471
AspLEI GCGC 5 cut(s) 274, 276, 344, 676, 689
AspS9I GGNCC 5 cut(s) 134, 194, 382, 572, 726
AsuC2I CCSGG 1 cut(s) 740
AsuHPI GGTGA 1 cut(s) 437
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 4 cut(s) 134, 194, 572, 726
BaeGI GKGCMC 1 cut(s) 257
BbrPI CACGTG 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 257
BbvCI CCTCAGC 2 cut(s) 129, 549
BbvI GCAGC 4 cut(s) 263, 291, 300, 483
BccI CCATC 4 cut(s) 107, 485, 665, 716
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciT130I CCWGG 1 cut(s) 714
BciVI GTATCC 1 cut(s) 736
BcnI CCSGG 1 cut(s) 740
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 2 cut(s) 269, 483
BfmI CTRYAG 1 cut(s) 277
BfoI RGCGCY 2 cut(s) 345, 690
BfuI GTATCC 1 cut(s) 736
BisI GCNGC 5 cut(s) 277, 280, 289, 351, 472
BlsI GCNGC 5 cut(s) 278, 281, 290, 352, 473
Bme1390I CCNGG 2 cut(s) 714, 740
Bme18I GGWCC 4 cut(s) 134, 194, 572, 726
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 5 cut(s) 134, 194, 382, 572, 726
BmiI GGNNCC 7 cut(s) 135, 136, 164, 573, 574, 598, 727
BmrFI CCNGG 2 cut(s) 714, 740
BmsI GCATC 1 cut(s) 718
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 2 cut(s) 129, 549
BpuMI CCSGG 1 cut(s) 740
BsaAI YACGTR 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 98
BsaJI CCNNGG 5 cut(s) 148, 262, 576, 713, 738
Bsc4I CCNNNNNNNGG 8 cut(s) 85, 130, 131, 414, 462, 565, 696, 746
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 2 cut(s) 467, 706
Bse3DI GCAATG 1 cut(s) 665
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 5 cut(s) 148, 262, 576, 713, 738
BseGI GGATG 3 cut(s) 99, 657, 709
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 8 cut(s) 85, 130, 131, 414, 462, 565, 696, 746
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 3 cut(s) 120, 287, 563
BseNI ACTGG 2 cut(s) 467, 706
BsePI GCGCGC 1 cut(s) 272
BseRI GAGGAG 1 cut(s) 506
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 4 cut(s) 263, 291, 300, 483
BseYI CCCAGC 2 cut(s) 78, 124
Bsh1236I CGCG 2 cut(s) 274, 676
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 4 cut(s) 89, 267, 384, 466
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 2 cut(s) 385, 740
BslFI GGGAC 4 cut(s) 120, 408, 585, 739
BslI CCNNNNNNNGG 8 cut(s) 85, 130, 131, 414, 462, 565, 696, 746
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 4 cut(s) 120, 408, 585, 739
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 4 cut(s) 89, 267, 384, 466
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 4 cut(s) 350, 569, 600, 676
BspANI GGCC 4 cut(s) 89, 267, 384, 466
BspCNI CTCAG 3 cut(s) 121, 288, 562
BspFNI CGCG 2 cut(s) 274, 676
BspLI GGNNCC 7 cut(s) 135, 136, 164, 573, 574, 598, 727
BspMAI CTGCAG 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 665
BsrFI RCCGGY 1 cut(s) 384
BsrI ACTGG 2 cut(s) 467, 706
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 5 cut(s) 148, 262, 576, 713, 738
BssHII GCGCGC 1 cut(s) 272
BssMI GATC 1 cut(s) 169
BssNAI GTATAC 1 cut(s) 10
Bst1107I GTATAC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 714
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 4 cut(s) 274, 293, 555, 672
BstDEI CTNAG 3 cut(s) 129, 296, 549
BstF5I GGATG 3 cut(s) 99, 657, 709
BstFNI CGCG 2 cut(s) 274, 676
BstH2I RGCGCY 2 cut(s) 345, 690
BstHHI GCGC 5 cut(s) 274, 276, 344, 676, 689
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 1 cut(s) 169
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 6 cut(s) 273, 285, 288, 350, 599, 693
BstNI CCWGG 1 cut(s) 714
BstSCI CCNGG 2 cut(s) 712, 738
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 257
BstUI CGCG 2 cut(s) 274, 676
BstV1I GCAGC 4 cut(s) 263, 291, 300, 483
BstZ17I GTATAC 1 cut(s) 10
BsuI GTATCC 1 cut(s) 736
BsuRI GGCC 4 cut(s) 89, 267, 384, 466
BtgZI GCGATG 1 cut(s) 463
BtsCI GGATG 3 cut(s) 99, 657, 709
BtsIMutI CAGTG 2 cut(s) 179, 460
Cac8I GCNNGC 4 cut(s) 274, 293, 555, 672
CfoI GCGC 5 cut(s) 274, 276, 344, 676, 689
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 5 cut(s) 134, 194, 382, 572, 726
DdeI CTNAG 3 cut(s) 129, 296, 549
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco147I AGGCCT 2 cut(s) 89, 267
Eco32I GATATC 2 cut(s) 111, 157
Eco47I GGWCC 4 cut(s) 134, 194, 572, 726
Eco57I CTGAAG 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 252
Eco88I CYCGRG 1 cut(s) 147
EcoO109I RGGNCCY 2 cut(s) 134, 572
EcoRII CCWGG 1 cut(s) 712
EcoRV GATATC 2 cut(s) 111, 157
FaqI GGGAC 4 cut(s) 120, 408, 585, 739
FauI CCCGC 1 cut(s) 562
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 5 cut(s) 277, 280, 289, 351, 472
FokI GGATG 3 cut(s) 86, 644, 696
Fsp4HI GCNGC 5 cut(s) 277, 280, 289, 351, 472
FspBI CTAG 2 cut(s) 269, 483
GlaI GCGC 5 cut(s) 273, 275, 343, 675, 688
GluI GCNGC 5 cut(s) 277, 280, 289, 351, 472
GsaI CCCAGC 2 cut(s) 82, 128
GsuI CTGGAG 1 cut(s) 330
HaeII RGCGCY 2 cut(s) 345, 690
HaeIII GGCC 4 cut(s) 89, 267, 384, 466
HapII CCGG 2 cut(s) 385, 740
HhaI GCGC 5 cut(s) 274, 276, 344, 676, 689
Hin6I GCGC 5 cut(s) 272, 274, 342, 674, 687
HinP1I GCGC 5 cut(s) 272, 274, 342, 674, 687
HincII GTYRAC 1 cut(s) 390
HindII GTYRAC 1 cut(s) 390
HinfI GANTC 2 cut(s) 48, 323
HpaII CCGG 2 cut(s) 385, 740
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 3 cut(s) 10, 255, 390
Hpy188I TCNGA 2 cut(s) 104, 580
Hpy188III TCNNGA 3 cut(s) 114, 160, 425
Hpy8I GTNNAC 3 cut(s) 10, 255, 390
HpyAV CCTTC 2 cut(s) 79, 517
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 3 cut(s) 255, 279, 670
HpyF10VI GCNNNNNNNGC 6 cut(s) 273, 285, 288, 350, 599, 693
HpyF3I CTNAG 3 cut(s) 129, 296, 549
HpySE526I ACGT 1 cut(s) 251
HspAI GCGC 5 cut(s) 272, 274, 342, 674, 687
KflI GGGWCCC 2 cut(s) 134, 572
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 4 cut(s) 126, 206, 349, 645
Lsp1109I GCAGC 4 cut(s) 263, 291, 300, 483
LweI GCATC 1 cut(s) 718
MaeI CTAG 2 cut(s) 269, 483
MaeII ACGT 1 cut(s) 251
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 1 cut(s) 412
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 257
MseI TTAA 1 cut(s) 221
MspA1I CMGCKG 4 cut(s) 82, 128, 350, 593
MspI CCGG 2 cut(s) 385, 740
MspR9I CCNGG 2 cut(s) 714, 740
Mva1269I GAATGC 1 cut(s) 328
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 2 cut(s) 274, 676
MwoI GCNNNNNNNGC 6 cut(s) 273, 285, 288, 350, 599, 693
NciI CCSGG 1 cut(s) 740
NdeII GATC 1 cut(s) 169
NlaIV GGNNCC 7 cut(s) 135, 136, 164, 573, 574, 598, 727
NmeAIII GCCGAG 1 cut(s) 510
PauI GCGCGC 1 cut(s) 272
PceI AGGCCT 2 cut(s) 89, 267
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 1 cut(s) 323
PflMI CCANNNNNTGG 1 cut(s) 462
PkrI GCNGC 5 cut(s) 278, 281, 290, 352, 473
Ple19I CGATCG 1 cut(s) 172
PleI GAGTC 1 cut(s) 42
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
PpsI GAGTC 1 cut(s) 42
Ppu21I YACGTR 1 cut(s) 252
PpuMI RGGWCCY 2 cut(s) 134, 572
Psp5II RGGWCCY 2 cut(s) 134, 572
Psp6I CCWGG 1 cut(s) 712
PspCI CACGTG 1 cut(s) 252
PspFI CCCAGC 2 cut(s) 78, 124
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 7 cut(s) 135, 136, 164, 573, 574, 598, 727
PspPI GGNCC 5 cut(s) 134, 194, 382, 572, 726
PspPPI RGGWCCY 2 cut(s) 134, 572
PstI CTGCAG 1 cut(s) 281
PteI GCGCGC 1 cut(s) 272
PvuI CGATCG 1 cut(s) 172
PvuII CAGCTG 3 cut(s) 82, 128, 593
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 5 cut(s) 277, 280, 289, 351, 472
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 5 cut(s) 134, 194, 382, 572, 726
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 2 cut(s) 714, 740
SduI GDGCHC 1 cut(s) 257
SfaNI GCATC 1 cut(s) 718
SfcI CTRYAG 1 cut(s) 277
SinI GGWCC 4 cut(s) 134, 194, 572, 726
Sse9I AATT 1 cut(s) 412
SseBI AGGCCT 2 cut(s) 89, 267
SsiI CCGC 4 cut(s) 350, 569, 600, 676
SspMI CTAG 2 cut(s) 269, 483
StuI AGGCCT 2 cut(s) 89, 267
StyD4I CCNGG 2 cut(s) 712, 738
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 92
TaqII GACCGA 1 cut(s) 276
TasI AATT 1 cut(s) 412
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 2 cut(s) 186, 467
TseI GCWGC 4 cut(s) 276, 279, 288, 471
TspRI CASTG 2 cut(s) 186, 467
Van91I CCANNNNNTGG 1 cut(s) 462
VneI GTGCAC 1 cut(s) 253
VpaK11BI GGWCC 4 cut(s) 134, 194, 572, 726
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 2 cut(s) 269, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.