RchiOBHm_Chr7g0227381

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000863
Physical Location & Seq
Reverse (-)
50625336 .. 50627137
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20365

Sequence Viewer

Length: 309 bp
ATGAGTTCGACAAAACCAGACCGACACTCGTTGACCCGTTTTCCCGCGACAGGAAACCCGGTCCTTTCTCAATTTTCCGGCCACCTCCAGGAGTCGAATGGGTCTGGTTCGCTTCATCTAATCAACACGCGTCAGATCCCTATCGTTTCTTCTCCGAAAAGCCATCGCCGGCGGCAGGAGGAATCTCAAAGGGTTATCGGGTTTCCGATCGGATTTCCCGATTCCGGCCAATTCGCGGAGTCTCACCGGTGTCAAATGCTTCCTCTCGATCTTGCGCAACCTATCCATGGTGTTGGTTTGTCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.24

Weight (kDa)

10.65

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 276
AccII CGCG 3 cut(s) 47, 130, 236
AciI CCGC 3 cut(s) 45, 172, 236
AclWI GGATC 1 cut(s) 130
AcoI YGGCCR 2 cut(s) 79, 226
AfiI CCNNNNNNNGG 6 cut(s) 50, 88, 175, 224, 235, 287
AflIII ACRYGT 1 cut(s) 128
AgeI ACCGGT 1 cut(s) 246
AjnI CCWGG 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 1 cut(s) 130
AoxI GGCC 2 cut(s) 79, 226
AsiGI ACCGGT 1 cut(s) 246
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 61
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 61
BccI CCATC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 246
BisI GCNGC 1 cut(s) 173
BlsI GCNGC 1 cut(s) 174
Bme1390I CCNGG 2 cut(s) 59, 89
Bme18I GGWCC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 61
BmrFI CCNGG 2 cut(s) 59, 89
BpmI CTGGAG 1 cut(s) 71
BpuMI CCSGG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 88, 175, 224, 235, 287
Bse118I RCCGGY 2 cut(s) 168, 246
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 286
BseJI GATNNNNATC 1 cut(s) 140
BseLI CCNNNNNNNGG 6 cut(s) 50, 88, 175, 224, 235, 287
Bsh1236I CGCG 3 cut(s) 47, 130, 236
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 2 cut(s) 81, 228
BshTI ACCGGT 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 5 cut(s) 59, 78, 169, 225, 247
BslI CCNNNNNNNGG 6 cut(s) 50, 88, 175, 224, 235, 287
BsmAI GTCTC 1 cut(s) 246
BsnI GGCC 2 cut(s) 81, 228
Bsp143I GATC 3 cut(s) 135, 207, 268
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 3 cut(s) 45, 172, 236
BspANI GGCC 2 cut(s) 81, 228
BspFNI CGCG 3 cut(s) 47, 130, 236
BspPI GGATC 1 cut(s) 130
BsrFI RCCGGY 2 cut(s) 168, 246
BssAI RCCGGY 2 cut(s) 168, 246
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 3 cut(s) 135, 207, 268
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 170
BstDSI CCRYGG 1 cut(s) 286
BstFNI CGCG 3 cut(s) 47, 130, 236
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 3 cut(s) 138, 210, 271
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 3 cut(s) 135, 207, 268
BstMCI CGRYCG 1 cut(s) 210
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 57, 87
BstUI CGCG 3 cut(s) 47, 130, 236
BstX2I RGATCY 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 293
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 2 cut(s) 81, 228
BtgI CCRYGG 1 cut(s) 286
BtgZI GCGATG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 170
CfoI GCGC 1 cut(s) 277
Cfr10I RCCGGY 2 cut(s) 168, 246
Cfr13I GGNCC 1 cut(s) 61
CseI GACGC 1 cut(s) 119
CspAI ACCGGT 1 cut(s) 246
CviAII CATG 1 cut(s) 287
CviJI RGCY 3 cut(s) 81, 162, 228
CviKI_1 RGCY 3 cut(s) 81, 162, 228
DpnI GATC 3 cut(s) 137, 209, 270
DpnII GATC 3 cut(s) 135, 207, 268
EaeI YGGCCR 2 cut(s) 79, 226
Eco130I CCWWGG 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 290
FaiI YATR 1 cut(s) 288
FatI CATG 1 cut(s) 286
FauI CCCGC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 173
FspI TGCGCA 1 cut(s) 276
GlaI GCGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 173
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 2 cut(s) 81, 228
HapII CCGG 5 cut(s) 59, 78, 169, 225, 247
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 277
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 4 cut(s) 92, 182, 221, 239
HpaII CCGG 5 cut(s) 59, 78, 169, 225, 247
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 4 cut(s) 135, 156, 207, 212
Hpy188III TCNNGA 3 cut(s) 218, 266, 303
Hpy8I GTNNAC 1 cut(s) 33
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 1 cut(s) 275
KroI GCCGGC 1 cut(s) 168
KroNI GCCGGC 1 cut(s) 170
Kzo9I GATC 3 cut(s) 135, 207, 268
MalI GATC 3 cut(s) 137, 209, 270
MboI GATC 3 cut(s) 135, 207, 268
MboII GAAGA 1 cut(s) 141
MflI RGATCY 1 cut(s) 135
MluCI AATT 2 cut(s) 71, 230
MluI ACGCGT 1 cut(s) 128
MlyI GAGTC 2 cut(s) 101, 248
MnlI CCTC 3 cut(s) 95, 172, 273
MreI CGCCGGCG 1 cut(s) 168
MroNI GCCGGC 1 cut(s) 168
MspI CCGG 5 cut(s) 59, 78, 169, 225, 247
MspR9I CCNGG 2 cut(s) 59, 89
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 3 cut(s) 47, 130, 236
NaeI GCCGGC 1 cut(s) 170
NciI CCSGG 1 cut(s) 59
NcoI CCATGG 1 cut(s) 286
NdeII GATC 3 cut(s) 135, 207, 268
NgoMIV GCCGGC 1 cut(s) 168
NlaIII CATG 1 cut(s) 290
NsbI TGCGCA 1 cut(s) 276
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdiI GCCGGC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 182, 221
PfoI TCCNGGA 1 cut(s) 87
PinAI ACCGGT 1 cut(s) 246
PkrI GCNGC 1 cut(s) 174
Ple19I CGATCG 1 cut(s) 210
PleI GAGTC 2 cut(s) 100, 247
PpsI GAGTC 2 cut(s) 100, 247
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspPI GGNCC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 135
PvuI CGATCG 1 cut(s) 210
SatI GCNGC 1 cut(s) 173
Sau3AI GATC 3 cut(s) 135, 207, 268
Sau96I GGNCC 1 cut(s) 61
SchI GAGTC 2 cut(s) 101, 248
ScrFI CCNGG 2 cut(s) 59, 89
SetI ASST 2 cut(s) 87, 283
SgrAI CRCCGGYG 2 cut(s) 168, 246
SinI GGWCC 1 cut(s) 61
Sse9I AATT 2 cut(s) 71, 230
SsiI CCGC 3 cut(s) 45, 172, 236
StyD4I CCNGG 2 cut(s) 57, 87
StyI CCWWGG 1 cut(s) 286
TaqI TCGA 3 cut(s) 8, 95, 267
TaqII GACCGA 1 cut(s) 36
TasI AATT 2 cut(s) 71, 230
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 2 cut(s) 182, 221
TspDTI ATGAA 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 61
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.