Rmu_sc0001016.1_g000045

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001016.1
OG0000863
Physical Location & Seq
Forward (+)
199044 .. 200181
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001016.1_g000045.1.cds

Sequence Viewer

Length: 639 bp
atgatgtctgagaagtaccaatccaaaaatgtgtgtgtaattggggcaggaccctcagggcttgttgctacaagagagctaaagaaagaaggtcatagagtggtggtgttggaacaaaaccatgatgtaggaggtcaatggctgtatgacccaaatgtggagggagagtgttgtgagatcaattgcgatagtggcagaccaagacatcctgtgttcagctggatcagacccctctcgagacagctgaaacgtttggctctagaaggactcccctcactccttgctggtagaacaacacaccgccaatcgctactagcactgccgatacaaacaacaactatccaccccacgagggagcaactcgtgagagtcgctaacaacgaggcactagataaggcctgtcaacaggagaccctgataccaatgattggtggtgtcccaacacctggagcagtcctcaccatagacccaagcattggtctagctggcacttttgtaccaccaagcataacctttgaaagccccacgggccccactcctagaagcactagcacctactggaccacaagtaatctacttgaactcccttcttctccccaatcaactcggcacagcgccaccacctcagccggcacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like K_oxygenase

Protein Analysis

212

Amino Acids

22.93

Weight (kDa)

7.7

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 632
AccB7I CCANNNNNTGG 3 cut(s) 428, 446, 476
AciI CCGC 1 cut(s) 301
AclI AACGTT 1 cut(s) 250
AclWI GGATC 1 cut(s) 230
AfaI GTAC 2 cut(s) 17, 498
AfiI CCNNNNNNNGG 5 cut(s) 157, 352, 428, 446, 476
AgsI TTSAA 2 cut(s) 518, 581
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 4 cut(s) 79, 219, 244, 485
AluI AGCT 4 cut(s) 79, 219, 244, 485
Alw26I GTCTC 2 cut(s) 232, 404
AlwI GGATC 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 2 cut(s) 396, 529
ApaI GGGCCC 1 cut(s) 533
AspLEI GCGC 1 cut(s) 617
AspS9I GGNCC 4 cut(s) 50, 529, 530, 561
AsuHPI GGTGA 1 cut(s) 451
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 2 cut(s) 50, 561
AxyI CCTNAGG 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 533
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BanI GGYRCC 1 cut(s) 632
BanII GRGCYC 1 cut(s) 533
BauI CACGAG 2 cut(s) 349, 362
BbvCI CCTCAGC 1 cut(s) 625
BciT130I CCWGG 1 cut(s) 447
BcoDI GTCTC 2 cut(s) 232, 404
BfaI CTAG 6 cut(s) 260, 314, 389, 482, 540, 549
BfoI RGCGCY 1 cut(s) 618
BglI GCCNNNNNGGC 1 cut(s) 528
Bme1390I CCNGG 1 cut(s) 447
Bme18I GGWCC 2 cut(s) 50, 561
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 4 cut(s) 50, 529, 530, 561
BmiI GGNNCC 4 cut(s) 52, 531, 532, 634
BmrFI CCNGG 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 441, 473
BpmI CTGGAG 1 cut(s) 468
Bpu10I CCTNAGC 1 cut(s) 625
BsaI GGTCTC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 525
BsaXI ACNNNNNCTCC 4 cut(s) 152, 182, 567, 597
Bsc4I CCNNNNNNNGG 5 cut(s) 157, 352, 428, 446, 476
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 563
Bse21I CCTNAGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 5 cut(s) 157, 352, 428, 446, 476
BseMII CTCAG 2 cut(s) 69, 639
BseNI ACTGG 1 cut(s) 563
BseSI GKGCMC 1 cut(s) 533
BshFI GGCC 2 cut(s) 398, 531
BshNI GGYRCC 1 cut(s) 632
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 1 cut(s) 630
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 5 cut(s) 157, 352, 428, 446, 476
BsmAI GTCTC 2 cut(s) 232, 404
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 2 cut(s) 398, 531
Bso31I GGTCTC 1 cut(s) 404
BsoBI CYCGRG 1 cut(s) 235
Bsp120I GGGCCC 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 2 cut(s) 177, 222
BspACI CCGC 1 cut(s) 301
BspANI GGCC 2 cut(s) 398, 531
BspCNI CTCAG 2 cut(s) 68, 638
BspLI GGNNCC 4 cut(s) 52, 531, 532, 634
BspPI GGATC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 404
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 1 cut(s) 563
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 1 cut(s) 525
BssMI GATC 2 cut(s) 177, 222
BssSI CACGAG 2 cut(s) 349, 362
Bst2BI CACGAG 2 cut(s) 349, 362
Bst2UI CCWGG 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 487, 631
BstDEI CTNAG 3 cut(s) 9, 55, 625
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 618
BstHHI GCGC 1 cut(s) 617
BstKTI GATC 2 cut(s) 180, 225
BstMAI GTCTC 2 cut(s) 232, 404
BstMBI GATC 2 cut(s) 177, 222
BstMWI GCNNNNNNNGC 2 cut(s) 192, 528
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 445
BstSLI GKGCMC 1 cut(s) 533
Bsu36I CCTNAGG 1 cut(s) 55
BsuRI GGCC 2 cut(s) 398, 531
BtgI CCRYGG 1 cut(s) 525
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 317
BtsIMutI CAGTG 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 487, 631
CfoI GCGC 1 cut(s) 617
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 4 cut(s) 50, 529, 530, 561
Csp6I GTAC 2 cut(s) 16, 497
CviAII CATG 1 cut(s) 122
CviQI GTAC 2 cut(s) 16, 497
DdeI CTNAG 3 cut(s) 9, 55, 625
DpnI GATC 2 cut(s) 179, 224
DpnII GATC 2 cut(s) 177, 222
Eco147I AGGCCT 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 404
Eco47I GGWCC 2 cut(s) 50, 561
Eco81I CCTNAGG 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 235
EcoO109I RGGNCCY 2 cut(s) 50, 530
EcoRII CCWGG 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 533
FaeI CATG 1 cut(s) 125
FaiI YATR 5 cut(s) 96, 123, 147, 464, 509
FaqI GGGAC 1 cut(s) 422
FatI CATG 1 cut(s) 121
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 533
FspBI CTAG 6 cut(s) 260, 314, 389, 482, 540, 549
GlaI GCGC 1 cut(s) 616
GsuI CTGGAG 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 618
HaeIII GGCC 2 cut(s) 398, 531
HapII CCGG 1 cut(s) 630
HhaI GCGC 1 cut(s) 617
Hin1II CATG 1 cut(s) 125
Hin6I GCGC 1 cut(s) 615
HinP1I GCGC 1 cut(s) 615
HincII GTYRAC 1 cut(s) 404
HindII GTYRAC 1 cut(s) 404
HinfI GANTC 2 cut(s) 267, 369
HpaII CCGG 1 cut(s) 630
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 2 cut(s) 10, 227
Hpy188III TCNNGA 4 cut(s) 235, 237, 260, 364
Hpy8I GTNNAC 1 cut(s) 404
HpyAV CCTTC 3 cut(s) 83, 257, 597
HpyCH4IV ACGT 1 cut(s) 250
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 528
HpyF3I CTNAG 3 cut(s) 9, 55, 625
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 1 cut(s) 125
HspAI GCGC 1 cut(s) 615
KroI GCCGGC 1 cut(s) 629
KroNI GCCGGC 1 cut(s) 631
Kzo9I GATC 2 cut(s) 177, 222
LmnI GCTCC 2 cut(s) 355, 449
MaeI CTAG 6 cut(s) 260, 314, 389, 482, 540, 549
MaeII ACGT 1 cut(s) 250
MalI GATC 2 cut(s) 179, 224
MboI GATC 2 cut(s) 177, 222
MboII GAAGA 1 cut(s) 582
MfeI CAATTG 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 2 cut(s) 39, 181
MlyI GAGTC 2 cut(s) 261, 378
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 9 cut(s) 64, 125, 154, 242, 283, 345, 376, 467, 634
MroNI GCCGGC 1 cut(s) 629
MspA1I CMGCKG 2 cut(s) 219, 244
MspI CCGG 1 cut(s) 630
MspR9I CCNGG 1 cut(s) 447
MunI CAATTG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 2 cut(s) 192, 528
NaeI GCCGGC 1 cut(s) 631
NdeII GATC 2 cut(s) 177, 222
NgoMIV GCCGGC 1 cut(s) 629
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 4 cut(s) 52, 531, 532, 634
NmeAIII GCCGAG 1 cut(s) 586
PaeR7I CTCGAG 1 cut(s) 235
PceI AGGCCT 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PdiI GCCGGC 1 cut(s) 631
PflMI CCANNNNNTGG 3 cut(s) 428, 446, 476
PleI GAGTC 2 cut(s) 261, 377
PpsI GAGTC 2 cut(s) 261, 377
PpuMI RGGWCCY 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 4 cut(s) 52, 531, 532, 634
PspOMI GGGCCC 1 cut(s) 529
PspPI GGNCC 4 cut(s) 50, 529, 530, 561
PspPPI RGGWCCY 1 cut(s) 50
PvuII CAGCTG 2 cut(s) 219, 244
RsaI GTAC 2 cut(s) 17, 498
RsaNI GTAC 2 cut(s) 16, 497
Sau3AI GATC 2 cut(s) 177, 222
Sau96I GGNCC 4 cut(s) 50, 529, 530, 561
SchI GAGTC 2 cut(s) 261, 378
ScrFI CCNGG 1 cut(s) 447
SduI GDGCHC 1 cut(s) 533
Sfr274I CTCGAG 1 cut(s) 235
SinI GGWCC 2 cut(s) 50, 561
SlaI CTCGAG 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 2 cut(s) 39, 181
SseBI AGGCCT 1 cut(s) 398
SsiI CCGC 1 cut(s) 301
SspMI CTAG 6 cut(s) 260, 314, 389, 482, 540, 549
StuI AGGCCT 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 445
TaiI ACGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 236
TasI AATT 2 cut(s) 39, 181
TscAI CASTG 1 cut(s) 324
TspRI CASTG 1 cut(s) 324
Van91I CCANNNNNTGG 3 cut(s) 428, 446, 476
VpaK11BI GGWCC 2 cut(s) 50, 561
XbaI TCTAGA 1 cut(s) 259
XhoI CTCGAG 1 cut(s) 235
XspI CTAG 6 cut(s) 260, 314, 389, 482, 540, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.