Rmu_sc0006021.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006021.1
OG0000863
Physical Location & Seq
Forward (+)
60935 .. 61195
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006021.1_g000020.1.cds

Sequence Viewer

Length: 261 bp
atgactaccaacactccggacgtcaatagtgacgatcagccccacgaggtggtgacccgtgaggtccaacgcatgcttgaattccaaagcctgaatactgaggcacattcggtcatgaccactgatgtgaccaccgtacttgagatagcgatgcgtgagctaatggagacacgtgcacaggctgagaccaagcacgcggcaactcgtcgagaggtcaaaaatatgacaaaccagaatcgcattctccgagaggcactctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.91

Weight (kDa)

5.28

Isoelectric Point (pI)

20.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 24
AccB7I CCANNNNNTGG 1 cut(s) 49
AccII CGCG 1 cut(s) 197
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 1 cut(s) 197
AcsI RAATTY 1 cut(s) 80
AcvI CACGTG 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 21
AdeI CACNNNGTG 1 cut(s) 49
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 49
AflIII ACRYGT 1 cut(s) 170
AgsI TTSAA 1 cut(s) 80
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 161, 179
Alw44I GTGCAC 1 cut(s) 174
Aor13HI TCCGGA 1 cut(s) 16
ApaLI GTGCAC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 178
BauI CACGAG 1 cut(s) 44
BbrPI CACGTG 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 161, 179
BfaI CTAG 1 cut(s) 259
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmsI GCATC 1 cut(s) 141
BplI GAGNNNNNCTC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 2 cut(s) 90, 174
BseSI GKGCMC 1 cut(s) 178
Bsh1236I CGCG 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 2 cut(s) 161, 179
BsmI GAATGC 1 cut(s) 240
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 178
Bsp13I TCCGGA 1 cut(s) 16
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 1 cut(s) 197
BspCNI CTCAG 2 cut(s) 91, 175
BspEI TCCGGA 1 cut(s) 16
BspFNI CGCG 1 cut(s) 197
BspHI TCATGA 1 cut(s) 114
BspTNI GGTCTC 1 cut(s) 179
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 21
BssSI CACGAG 1 cut(s) 44
Bst2BI CACGAG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 136
BstACI GRCGYC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 74, 195
BstDEI CTNAG 2 cut(s) 99, 183
BstEII GGTNACC 1 cut(s) 52
BstFNI CGCG 1 cut(s) 197
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 2 cut(s) 161, 179
BstMBI GATC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 76
BstPI GGTNACC 1 cut(s) 52
BstSLI GKGCMC 1 cut(s) 178
BstUI CGCG 1 cut(s) 197
BtgZI GCGATG 1 cut(s) 164
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 74, 195
CciI TCATGA 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 64
Csp6I GTAC 1 cut(s) 137
CspCI CAANNNNNGTGG 2 cut(s) 121, 156
CviAII CATG 2 cut(s) 73, 115
CviJI RGCY 4 cut(s) 40, 90, 160, 182
CviKI_1 RGCY 4 cut(s) 40, 90, 160, 182
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 2 cut(s) 99, 183
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 64
Eco72I CACGTG 1 cut(s) 173
Eco91I GGTNACC 1 cut(s) 52
EcoO65I GGTNACC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 80
FaeI CATG 2 cut(s) 76, 118
FaiI YATR 3 cut(s) 74, 116, 224
FatI CATG 2 cut(s) 72, 114
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 259
GluI GCNGC 1 cut(s) 198
HapII CCGG 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 76, 118
HinfI GANTC 1 cut(s) 235
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 3 cut(s) 17, 115, 209
Hpy8I GTNNAC 1 cut(s) 176
Hpy99I CGWCG 1 cut(s) 210
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 21, 172
HpyCH4V TGCA 1 cut(s) 176
HpyF3I CTNAG 2 cut(s) 99, 183
HpySE526I ACGT 2 cut(s) 21, 172
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 76, 118
Kpn2I TCCGGA 1 cut(s) 16
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 30, 104, 164, 245
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 259
MaeII ACGT 2 cut(s) 21, 172
MaeIII GTNAC 3 cut(s) 29, 52, 127
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 5 cut(s) 40, 55, 94, 205, 244
MroI TCCGGA 1 cut(s) 16
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 240
MvnI CGCG 1 cut(s) 197
NdeII GATC 1 cut(s) 34
NlaIII CATG 2 cut(s) 76, 118
NmuCI GTSAC 3 cut(s) 29, 52, 127
NspI RCATGY 1 cut(s) 76
OliI CACNNNNGTG 1 cut(s) 125
PaeI GCATGC 1 cut(s) 76
PagI TCATGA 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 49
PkrI GCNGC 1 cut(s) 199
PmaCI CACGTG 1 cut(s) 173
PmlI CACGTG 1 cut(s) 173
Ppu21I YACGTR 1 cut(s) 173
PspCI CACGTG 1 cut(s) 173
PspEI GGTNACC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 64
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 125
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 1 cut(s) 64
SduI GDGCHC 1 cut(s) 178
SetI ASST 6 cut(s) 24, 51, 66, 162, 175, 216
SfaNI GCATC 1 cut(s) 141
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SphI GCATGC 1 cut(s) 76
Sse9I AATT 1 cut(s) 80
SsiI CCGC 1 cut(s) 197
SspMI CTAG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 2 cut(s) 24, 175
TaqI TCGA 1 cut(s) 208
TaqII GACCGA 1 cut(s) 100
TasI AATT 1 cut(s) 80
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 3 cut(s) 29, 52, 127
Tsp45I GTSAC 3 cut(s) 29, 52, 127
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 49
VneI GTGCAC 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 80
XceI RCATGY 1 cut(s) 76
XspI CTAG 1 cut(s) 259
ZraI GACGTC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.