RchiOBHm_Chr5g0041081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000863
Physical Location & Seq
Reverse (-)
35768767 .. 35769121
355 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31953

Sequence Viewer

Length: 195 bp
ATGGGATGTACAGTAAGTGGAAATGAGTCTCCTTTTATAGGGGTGGGAGGCCCATTCCTTTACATGTTTTCCAATGTGGGACAAGAAACCTCTATTCTACTATATAAAGCTTATCATGGAGCCATCTTAGCAAGGCCAGGAAGATGGCTTTCCGGTAAGCTCTTGGCGGCATCCGACCACCATGGGGTAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

64

Amino Acids

6.78

Weight (kDa)

7.96

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 167
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 38, 184
AflIII ACRYGT 1 cut(s) 63
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 110, 160
AluI AGCT 2 cut(s) 110, 160
Alw26I GTCTC 1 cut(s) 33
AoxI GGCC 2 cut(s) 49, 134
AspS9I GGNCC 1 cut(s) 50
BccI CCATC 2 cut(s) 131, 138
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 33
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 138
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 181
BsaWI WCCGGW 1 cut(s) 152
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 184
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 181
BseGI GGATG 2 cut(s) 11, 170
BseLI CCNNNNNNNGG 2 cut(s) 38, 184
BshFI GGCC 2 cut(s) 51, 136
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 38, 184
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 2 cut(s) 51, 136
Bsp1407I TGTACA 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 181
BspACI CCGC 1 cut(s) 167
BspANI GGCC 2 cut(s) 51, 136
BspLI GGNNCC 1 cut(s) 121
BsrGI TGTACA 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 8
BstDEI CTNAG 1 cut(s) 127
BstDSI CCRYGG 1 cut(s) 181
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 2 cut(s) 11, 170
BstMAI GTCTC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 136
BstXI CCANNNNNNTGG 1 cut(s) 144
BsuRI GGCC 2 cut(s) 51, 136
BtgI CCRYGG 1 cut(s) 181
BtsCI GGATG 2 cut(s) 11, 170
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 9
CviAII CATG 3 cut(s) 64, 116, 182
CviJI RGCY 6 cut(s) 51, 110, 122, 136, 148, 160
CviKI_1 RGCY 6 cut(s) 51, 110, 122, 136, 148, 160
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 181
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 3 cut(s) 67, 119, 185
FaiI YATR 6 cut(s) 38, 65, 103, 105, 117, 183
FaqI GGGAC 1 cut(s) 93
FatI CATG 3 cut(s) 63, 115, 181
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 2 cut(s) 18, 157
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 2 cut(s) 51, 136
HapII CCGG 1 cut(s) 153
Hin1II CATG 3 cut(s) 67, 119, 185
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 13
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 3 cut(s) 67, 119, 185
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 123, 150, 166
LweI GCATC 1 cut(s) 179
MboII GAAGA 1 cut(s) 153
MlyI GAGTC 1 cut(s) 35
MnlI CCTC 2 cut(s) 41, 100
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 181
NlaIII CATG 3 cut(s) 67, 119, 185
NlaIV GGNNCC 1 cut(s) 121
NspI RCATGY 1 cut(s) 67
PciI ACATGT 1 cut(s) 63
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PscI ACATGT 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 50
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SatI GCNGC 1 cut(s) 168
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 138
SetI ASST 3 cut(s) 92, 112, 162
SfaNI GCATC 1 cut(s) 179
SgeI CNNG 8 cut(s) 76, 95, 128, 144, 149, 150, 165, 175
SsiI CCGC 1 cut(s) 167
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 13
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 36
XceI RCATGY 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.