Rmu_sc0002809.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002809.1
OG0000863
Physical Location & Seq
Forward (+)
5943 .. 7894
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002809.1_g000002.1.cds

Sequence Viewer

Length: 471 bp
atgtctaatccttttactgttttgcaggaaaatttggctgaaacatttggagctagaaggactcccctcgctccttgctggaagaacaacaagccaccaacggctaccagcactctcgataccaatagcgacgattcacctcacgaggcagcgacccctgaggtccagcgcacgcttgagtttcagagctcgaacaccgagacatgcttggtcatgaccactaacgtgaccactacactggaaataacgatgcgtgacttaatggagacacattcacaggccgaggccgagcgcgcggcagctagggcagctcgccgagaagtggaaaatatgacaaaccagaatagcattctccgggaggcactccagaggagagttgcgaacaattggtggtgtcccaacacccggagcaatcctcaccacagaccccaagcactggcctcactggcacttttgtgccaccaagcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.5

Weight (kDa)

6.2

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 436
AccII CGCG 2 cut(s) 294, 296
AciI CCGC 1 cut(s) 296
AcsI RAATTY 1 cut(s) 31
AfiI CCNNNNNNNGG 3 cut(s) 322, 405, 436
AleI CACNNNNGTG 2 cut(s) 224, 454
AluBI AGCT 4 cut(s) 53, 189, 302, 311
AluI AGCT 4 cut(s) 53, 189, 302, 311
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 194, 260
AoxI GGCC 3 cut(s) 279, 285, 438
ApeKI GCWGC 3 cut(s) 149, 299, 308
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 3 cut(s) 171, 294, 296
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 2 cut(s) 356, 406
AsuHPI GGTGA 2 cut(s) 129, 410
AvaII GGWCC 1 cut(s) 163
AxyI CCTNAGG 1 cut(s) 159
BanII GRGCYC 1 cut(s) 191
BauI CACGAG 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 3 cut(s) 161, 311, 320
BceAI ACGGC 1 cut(s) 117
BcnI CCSGG 2 cut(s) 356, 406
BcoDI GTCTC 2 cut(s) 194, 260
BfaI CTAG 2 cut(s) 54, 303
BglI GCCNNNNNGGC 1 cut(s) 446
BisI GCNGC 4 cut(s) 150, 297, 300, 309
BlsI GCNGC 4 cut(s) 151, 298, 301, 310
Bme1390I CCNGG 2 cut(s) 356, 406
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 356, 406
BmsI GCATC 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 400, 432
BpmI CTGGAG 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 2 cut(s) 356, 406
BsaJI CCNNGG 1 cut(s) 282
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 405, 436
Bse1I ACTGG 3 cut(s) 243, 441, 450
Bse21I CCTNAGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 322, 405, 436
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 3 cut(s) 243, 441, 450
BsePI GCGCGC 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 385
BseXI GCAGC 3 cut(s) 161, 311, 320
Bsh1236I CGCG 2 cut(s) 294, 296
BshFI GGCC 3 cut(s) 281, 287, 440
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 355, 406
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 3 cut(s) 322, 405, 436
BsmAI GTCTC 2 cut(s) 194, 260
BsmFI GGGAC 1 cut(s) 381
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 3 cut(s) 281, 287, 440
Bsp1286I GDGCHC 1 cut(s) 191
BspACI CCGC 1 cut(s) 296
BspANI GGCC 3 cut(s) 281, 287, 440
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 2 cut(s) 294, 296
BspHI TCATGA 1 cut(s) 213
BsrI ACTGG 3 cut(s) 243, 441, 450
BssECI CCNNGG 1 cut(s) 282
BssHII GCGCGC 1 cut(s) 292
BssSI CACGAG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 19
BstC8I GCNNGC 3 cut(s) 173, 294, 313
BstDEI CTNAG 1 cut(s) 159
BstFNI CGCG 2 cut(s) 294, 296
BstHHI GCGC 3 cut(s) 171, 294, 296
BstMAI GTCTC 2 cut(s) 194, 260
BstMWI GCNNNNNNNGC 4 cut(s) 293, 305, 308, 446
BstNSI RCATGY 1 cut(s) 207
BstSCI CCNGG 2 cut(s) 354, 404
BstUI CGCG 2 cut(s) 294, 296
BstV1I GCAGC 3 cut(s) 161, 311, 320
BstXI CCANNNNNNTGG 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 3 cut(s) 281, 287, 440
BtsIMutI CAGTG 3 cut(s) 236, 434, 443
Cac8I GCNNGC 3 cut(s) 173, 294, 313
CciI TCATGA 1 cut(s) 213
CfoI GCGC 3 cut(s) 171, 294, 296
Cfr13I GGNCC 1 cut(s) 163
CviAII CATG 2 cut(s) 204, 214
DdeI CTNAG 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 189
Eco24I GRGCYC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 189
Eco81I CCTNAGG 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 2 cut(s) 207, 217
FaiI YATR 3 cut(s) 205, 215, 332
FaqI GGGAC 1 cut(s) 381
FatI CATG 2 cut(s) 203, 213
Fnu4HI GCNGC 4 cut(s) 150, 297, 300, 309
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 4 cut(s) 150, 297, 300, 309
FspBI CTAG 2 cut(s) 54, 303
GlaI GCGC 3 cut(s) 170, 293, 295
GluI GCNGC 4 cut(s) 150, 297, 300, 309
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 3 cut(s) 281, 287, 440
HapII CCGG 2 cut(s) 355, 406
HhaI GCGC 3 cut(s) 171, 294, 296
Hin1II CATG 2 cut(s) 207, 217
Hin6I GCGC 3 cut(s) 169, 292, 294
HinP1I GCGC 3 cut(s) 169, 292, 294
HinfI GANTC 2 cut(s) 61, 134
HpaII CCGG 2 cut(s) 355, 406
HphI GGTGA 2 cut(s) 129, 410
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 4 cut(s) 116, 143, 214, 367
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 4 cut(s) 293, 305, 308, 446
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 2 cut(s) 207, 217
HspAI GCGC 3 cut(s) 169, 292, 294
LmnI GCTCC 3 cut(s) 50, 76, 408
Lsp1109I GCAGC 3 cut(s) 161, 311, 320
LweI GCATC 1 cut(s) 240
MaeI CTAG 2 cut(s) 54, 303
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 226, 254
MboII GAAGA 1 cut(s) 94
MfeI CAATTG 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 2 cut(s) 31, 385
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 9 cut(s) 77, 139, 150, 154, 277, 352, 363, 426, 451
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 2 cut(s) 224, 454
MspI CCGG 2 cut(s) 355, 406
MspR9I CCNGG 2 cut(s) 356, 406
MunI CAATTG 1 cut(s) 385
Mva1269I GAATGC 1 cut(s) 348
MvnI CGCG 2 cut(s) 294, 296
MwoI GCNNNNNNNGC 4 cut(s) 293, 305, 308, 446
NciI CCSGG 2 cut(s) 356, 406
NlaIII CATG 2 cut(s) 207, 217
NmeAIII GCCGAG 3 cut(s) 307, 313, 341
NmuCI GTSAC 2 cut(s) 226, 254
NspI RCATGY 1 cut(s) 207
OliI CACNNNNGTG 2 cut(s) 224, 454
PagI TCATGA 1 cut(s) 213
PauI GCGCGC 1 cut(s) 292
PctI GAATGC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 4 cut(s) 151, 298, 301, 310
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp124BI GAGCTC 1 cut(s) 191
PspPI GGNCC 1 cut(s) 163
PteI GCGCGC 1 cut(s) 292
RseI CAYNNNNRTG 2 cut(s) 224, 454
SacI GAGCTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 4 cut(s) 150, 297, 300, 309
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 356, 406
SduI GDGCHC 1 cut(s) 191
SetI ASST 7 cut(s) 55, 142, 165, 191, 228, 304, 313
SfaNI GCATC 1 cut(s) 240
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 2 cut(s) 224, 454
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 2 cut(s) 31, 385
SsiI CCGC 1 cut(s) 296
SspMI CTAG 2 cut(s) 54, 303
SstI GAGCTC 1 cut(s) 191
StyD4I CCNGG 2 cut(s) 354, 404
TaaI ACNGT 1 cut(s) 19
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 117, 191
TasI AATT 2 cut(s) 31, 385
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TscAI CASTG 3 cut(s) 243, 441, 450
TseFI GTSAC 2 cut(s) 226, 254
TseI GCWGC 3 cut(s) 149, 299, 308
Tsp45I GTSAC 2 cut(s) 226, 254
TspRI CASTG 3 cut(s) 243, 441, 450
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 207
XspI CTAG 2 cut(s) 54, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.