Rmu_sc0005954.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005954.1
OG0000863
Physical Location & Seq
Forward (+)
28970 .. 29707
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005954.1_g000010.1.cds

Sequence Viewer

Length: 654 bp
atggctaccagcaatcccgataccaacagcgaggatctgcctcccgagacaacaacccgcaaggtccagcttaccctcgagtttcagagcccaagcaccaagactggatcagttgtgaccaccgacccaaccacaaggctacagatagcaatgcgcaacctcatcgagacacgtgcacaggtcgaggcggagggctcagcggccatggctgctcgccgggaggtcaaaaacataaccaaccagaatcataacctacaagaagcactccagtggcgagtcactcatgacgacgtcttagacagggcccacgaacaggaaaccccgataccaaccattggcggtgtccctacactgggaccggccctcattacagaccttgccattagcctagctggcaccttcatgcccccaaacctcttgccaccttggtgtcgcaccaattccccagccgaatgtcgatatagcgggaaccttgggtgcaaacaccgctattatcgccaacatacctctacccgatcccgacacccggctattgctccaaatgaacgaagccatcgcctccttacaggcatgaatagaaagcgccgaaagcaaggccggatggcagccgatcacatcctgtttccagggaaagacaggacccttcgccgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.33

Weight (kDa)

10.01

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
Acc16I TGCGCA 1 cut(s) 155
AccB1I GGYRCC 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 335
AciI CCGC 7 cut(s) 58, 188, 200, 339, 465, 487, 649
AclWI GGATC 3 cut(s) 42, 115, 510
AcoI YGGCCR 1 cut(s) 201
AcvI CACGTG 1 cut(s) 173
AcyI GRCGYC 1 cut(s) 291
AfiI CCNNNNNNNGG 5 cut(s) 313, 335, 352, 353, 526
AflIII ACRYGT 1 cut(s) 170
AjnI CCWGG 1 cut(s) 625
AleI CACNNNNGTG 2 cut(s) 268, 427
AluBI AGCT 2 cut(s) 70, 392
AluI AGCT 2 cut(s) 70, 392
Alw21I GWGCWC 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 41, 161
Alw44I GTGCAC 1 cut(s) 174
AlwI GGATC 3 cut(s) 42, 115, 510
Ama87I CYCGRG 2 cut(s) 44, 77
AoxI GGCC 4 cut(s) 201, 303, 360, 595
ApaI GGGCCC 1 cut(s) 307
ApaLI GTGCAC 1 cut(s) 174
ApeKI GCWGC 2 cut(s) 209, 605
AspLEI GCGC 2 cut(s) 156, 585
AspS9I GGNCC 6 cut(s) 64, 303, 304, 356, 361, 639
AsuC2I CCSGG 2 cut(s) 218, 527
AvaI CYCGRG 2 cut(s) 44, 77
AvaII GGWCC 3 cut(s) 64, 356, 639
BaeGI GKGCMC 2 cut(s) 178, 307
BanI GGYRCC 1 cut(s) 395
BanII GRGCYC 3 cut(s) 92, 197, 307
BbrPI CACGTG 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 196, 617
BccI CCATC 2 cut(s) 561, 595
BcgI CGANNNNNNTGC 4 cut(s) 145, 155, 179, 189
BciT130I CCWGG 1 cut(s) 627
BcnI CCSGG 2 cut(s) 218, 527
BcoDI GTCTC 2 cut(s) 41, 161
BfaI CTAG 2 cut(s) 389, 652
BfmI CTRYAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 586
BglI GCCNNNNNGGC 1 cut(s) 393
BisI GCNGC 4 cut(s) 201, 210, 606, 649
BlpI GCTNAGC 1 cut(s) 196
BlsI GCNGC 4 cut(s) 202, 211, 607, 650
Bme1390I CCNGG 3 cut(s) 218, 527, 627
Bme18I GGWCC 3 cut(s) 64, 356, 639
BmeT110I CYCGRG 2 cut(s) 44, 77
BmgT120I GGNCC 6 cut(s) 64, 303, 304, 356, 361, 639
BmiI GGNNCC 5 cut(s) 305, 357, 397, 470, 641
BmrFI CCNGG 3 cut(s) 218, 527, 627
BmrI ACTGGG 1 cut(s) 362
BmuI ACTGGG 1 cut(s) 362
BpmI CTGGAG 1 cut(s) 251
Bpu1102I GCTNAGC 1 cut(s) 196
BpuMI CCSGG 2 cut(s) 218, 527
BsaAI YACGTR 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 4 cut(s) 204, 425, 472, 626
Bsc4I CCNNNNNNNGG 5 cut(s) 313, 335, 352, 353, 526
Bse118I RCCGGY 1 cut(s) 358
Bse1I ACTGG 3 cut(s) 109, 268, 357
Bse3DI GCAATG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 4 cut(s) 204, 425, 472, 626
BseGI GGATG 2 cut(s) 606, 615
BseLI CCNNNNNNNGG 5 cut(s) 313, 335, 352, 353, 526
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 3 cut(s) 109, 268, 357
BseSI GKGCMC 2 cut(s) 178, 307
BseXI GCAGC 2 cut(s) 196, 617
BseYI CCCAGC 1 cut(s) 445
BshFI GGCC 4 cut(s) 203, 305, 362, 597
BshNI GGYRCC 1 cut(s) 395
BsiHKAI GWGCWC 1 cut(s) 178
BsiHKCI CYCGRG 2 cut(s) 44, 77
BsiSI CCGG 4 cut(s) 217, 359, 527, 598
BslFI GGGAC 2 cut(s) 329, 369
BslI CCNNNNNNNGG 5 cut(s) 313, 335, 352, 353, 526
BsmAI GTCTC 2 cut(s) 41, 161
BsmFI GGGAC 2 cut(s) 329, 369
BsnI GGCC 4 cut(s) 203, 305, 362, 597
BsoBI CYCGRG 2 cut(s) 44, 77
Bsp120I GGGCCC 1 cut(s) 303
Bsp1286I GDGCHC 4 cut(s) 92, 178, 197, 307
Bsp143I GATC 4 cut(s) 34, 107, 515, 610
Bsp1720I GCTNAGC 1 cut(s) 196
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 7 cut(s) 58, 188, 200, 339, 465, 487, 649
BspANI GGCC 4 cut(s) 203, 305, 362, 597
BspCNI CTCAG 1 cut(s) 209
BspHI TCATGA 1 cut(s) 283
BspLI GGNNCC 5 cut(s) 305, 357, 397, 470, 641
BspPI GGATC 3 cut(s) 42, 115, 510
BspT107I GGYRCC 1 cut(s) 395
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 358
BsrI ACTGG 3 cut(s) 109, 268, 357
BssAI RCCGGY 1 cut(s) 358
BssECI CCNNGG 4 cut(s) 204, 425, 472, 626
BssMI GATC 4 cut(s) 34, 107, 515, 610
BssNI GRCGYC 1 cut(s) 291
BssT1I CCWWGG 3 cut(s) 204, 425, 472
Bst2UI CCWGG 1 cut(s) 627
BstACI GRCGYC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 214, 394
BstDEI CTNAG 2 cut(s) 196, 295
BstDSI CCRYGG 1 cut(s) 204
BstF5I GGATG 2 cut(s) 606, 615
BstH2I RGCGCY 1 cut(s) 586
BstHHI GCGC 2 cut(s) 156, 585
BstKTI GATC 4 cut(s) 37, 110, 518, 613
BstMAI GTCTC 2 cut(s) 41, 161
BstMBI GATC 4 cut(s) 34, 107, 515, 610
BstMWI GCNNNNNNNGC 6 cut(s) 206, 209, 393, 486, 495, 589
BstNI CCWGG 1 cut(s) 627
BstSCI CCNGG 3 cut(s) 216, 525, 625
BstSFI CTRYAG 1 cut(s) 140
BstSLI GKGCMC 2 cut(s) 178, 307
BstV1I GCAGC 2 cut(s) 196, 617
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 4 cut(s) 203, 305, 362, 597
BtgI CCRYGG 1 cut(s) 204
BtgZI GCGATG 1 cut(s) 539
BtsCI GGATG 2 cut(s) 606, 615
BtsIMutI CAGTG 2 cut(s) 275, 350
Cac8I GCNNGC 2 cut(s) 214, 394
CciI TCATGA 1 cut(s) 283
CfoI GCGC 2 cut(s) 156, 585
Cfr10I RCCGGY 1 cut(s) 358
Cfr13I GGNCC 6 cut(s) 64, 303, 304, 356, 361, 639
CviAII CATG 4 cut(s) 205, 284, 403, 571
DdeI CTNAG 2 cut(s) 196, 295
DpnI GATC 4 cut(s) 36, 109, 517, 612
DpnII GATC 4 cut(s) 34, 107, 515, 610
EaeI YGGCCR 1 cut(s) 201
EciI GGCGGA 1 cut(s) 203
Eco130I CCWWGG 3 cut(s) 204, 425, 472
Eco24I GRGCYC 3 cut(s) 92, 197, 307
Eco47I GGWCC 3 cut(s) 64, 356, 639
Eco72I CACGTG 1 cut(s) 173
Eco88I CYCGRG 2 cut(s) 44, 77
EcoO109I RGGNCCY 2 cut(s) 303, 639
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 3 cut(s) 204, 425, 472
EcoT38I GRGCYC 3 cut(s) 92, 197, 307
ErhI CCWWGG 3 cut(s) 204, 425, 472
FaeI CATG 4 cut(s) 208, 287, 406, 574
FaiI YATR 8 cut(s) 206, 233, 249, 285, 404, 462, 504, 572
FaqI GGGAC 2 cut(s) 329, 369
FatI CATG 4 cut(s) 204, 283, 402, 570
FauI CCCGC 2 cut(s) 65, 458
Fnu4HI GCNGC 4 cut(s) 201, 210, 606, 649
FokI GGATG 2 cut(s) 602, 613
FriOI GRGCYC 3 cut(s) 92, 197, 307
Fsp4HI GCNGC 4 cut(s) 201, 210, 606, 649
FspBI CTAG 2 cut(s) 389, 652
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 2 cut(s) 155, 584
GluI GCNGC 4 cut(s) 201, 210, 606, 649
GsaI CCCAGC 1 cut(s) 449
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 586
HaeIII GGCC 4 cut(s) 203, 305, 362, 597
HapII CCGG 4 cut(s) 217, 359, 527, 598
HhaI GCGC 2 cut(s) 156, 585
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 4 cut(s) 208, 287, 406, 574
Hin6I GCGC 2 cut(s) 154, 583
HinP1I GCGC 2 cut(s) 154, 583
HinfI GANTC 2 cut(s) 244, 276
HpaII CCGG 4 cut(s) 217, 359, 527, 598
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 5 cut(s) 17, 44, 166, 284, 519
Hpy8I GTNNAC 1 cut(s) 176
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 409, 653
HpyCH4IV ACGT 2 cut(s) 172, 291
HpyCH4V TGCA 2 cut(s) 176, 480
HpyF10VI GCNNNNNNNGC 6 cut(s) 206, 209, 393, 486, 495, 589
HpyF3I CTNAG 2 cut(s) 196, 295
HpySE526I ACGT 2 cut(s) 172, 291
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 4 cut(s) 208, 287, 406, 574
HspAI GCGC 2 cut(s) 154, 583
Kzo9I GATC 4 cut(s) 34, 107, 515, 610
LmnI GCTCC 1 cut(s) 541
Lsp1109I GCAGC 2 cut(s) 196, 617
MaeI CTAG 2 cut(s) 389, 652
MaeII ACGT 2 cut(s) 172, 291
MaeIII GTNAC 2 cut(s) 115, 277
MalI GATC 4 cut(s) 36, 109, 517, 612
MboI GATC 4 cut(s) 34, 107, 515, 610
MflI RGATCY 1 cut(s) 34
MhlI GDGCHC 4 cut(s) 92, 178, 197, 307
MluCI AATT 1 cut(s) 439
MlyI GAGTC 1 cut(s) 285
MslI CAYNNNNRTG 3 cut(s) 268, 401, 427
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 4 cut(s) 217, 359, 527, 598
MspR9I CCNGG 3 cut(s) 218, 527, 627
MvaI CCWGG 1 cut(s) 627
MwoI GCNNNNNNNGC 6 cut(s) 206, 209, 393, 486, 495, 589
NciI CCSGG 2 cut(s) 218, 527
NcoI CCATGG 1 cut(s) 204
NdeII GATC 4 cut(s) 34, 107, 515, 610
NlaIII CATG 4 cut(s) 208, 287, 406, 574
NlaIV GGNNCC 5 cut(s) 305, 357, 397, 470, 641
NmuCI GTSAC 2 cut(s) 115, 277
NsbI TGCGCA 1 cut(s) 155
OliI CACNNNNGTG 2 cut(s) 268, 427
PaeR7I CTCGAG 1 cut(s) 77
PagI TCATGA 1 cut(s) 283
PfeI GAWTC 1 cut(s) 244
PflFI GACNNNGTC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 335
PkrI GCNGC 4 cut(s) 202, 211, 607, 650
PleI GAGTC 1 cut(s) 284
PmaCI CACGTG 1 cut(s) 173
PmlI CACGTG 1 cut(s) 173
PpsI GAGTC 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 639
Psp5II RGGWCCY 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 625
PspCI CACGTG 1 cut(s) 173
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 5 cut(s) 305, 357, 397, 470, 641
PspOMI GGGCCC 1 cut(s) 303
PspPI GGNCC 6 cut(s) 64, 303, 304, 356, 361, 639
PspPPI RGGWCCY 1 cut(s) 639
PspXI VCTCGAGB 1 cut(s) 77
PsuI RGATCY 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 290
RseI CAYNNNNRTG 3 cut(s) 268, 401, 427
SatI GCNGC 4 cut(s) 201, 210, 606, 649
Sau3AI GATC 4 cut(s) 34, 107, 515, 610
Sau96I GGNCC 6 cut(s) 64, 303, 304, 356, 361, 639
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 3 cut(s) 218, 527, 627
SduI GDGCHC 4 cut(s) 92, 178, 197, 307
SfcI CTRYAG 1 cut(s) 140
Sfr274I CTCGAG 1 cut(s) 77
SinI GGWCC 3 cut(s) 64, 356, 639
SlaI CTCGAG 1 cut(s) 77
SmiMI CAYNNNNRTG 3 cut(s) 268, 401, 427
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 439
SsiI CCGC 7 cut(s) 58, 188, 200, 339, 465, 487, 649
SspMI CTAG 2 cut(s) 389, 652
StyD4I CCNGG 3 cut(s) 216, 525, 625
StyI CCWWGG 3 cut(s) 204, 425, 472
TaiI ACGT 2 cut(s) 175, 294
TaqI TCGA 4 cut(s) 78, 165, 183, 457
TasI AATT 1 cut(s) 439
TauI GCSGC 2 cut(s) 203, 651
TfiI GAWTC 1 cut(s) 244
TscAI CASTG 2 cut(s) 275, 357
TseFI GTSAC 2 cut(s) 115, 277
TseI GCWGC 2 cut(s) 209, 605
Tsp45I GTSAC 2 cut(s) 115, 277
TspDTI ATGAA 3 cut(s) 391, 558, 587
TspRI CASTG 2 cut(s) 275, 357
Tth111I GACNNNGTC 1 cut(s) 290
Van91I CCANNNNNTGG 1 cut(s) 335
VneI GTGCAC 1 cut(s) 174
VpaK11BI GGWCC 3 cut(s) 64, 356, 639
XhoI CTCGAG 1 cut(s) 77
XspI CTAG 2 cut(s) 389, 652
ZraI GACGTC 1 cut(s) 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.