Rmu_sc0000438.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000438.1
OG0000863
Physical Location & Seq
Reverse (-)
99963 .. 100286
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000438.1_g000020.1.cds

Sequence Viewer

Length: 324 bp
ctggaagaacgacacactctaccaattgctaccagcacccccgatacacacgacgacgatcagccccatgaagggacaacccgcgaggtcagacgcccgctcaagtttctcaacctagatactgaagtgcgctcggtcatgactacctatgccaccacctcactcaagatcgcgatgcgcgatctcatggagacctatgcacaggccgaggccgagcgtacagagaccgcagcagcctgtcgaaaggttgaaaataatgaggcactccgcgaggcactccagcggagagtagggaataacgaggcactagatagagcccgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.21

Weight (kDa)

5.4

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 100
AccII CGCG 4 cut(s) 84, 173, 180, 270
AciI CCGC 6 cut(s) 82, 98, 228, 268, 283, 319
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 94
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 2 cut(s) 71, 72
AgsI TTSAA 1 cut(s) 251
Alw26I GTCTC 2 cut(s) 185, 218
AoxI GGCC 2 cut(s) 204, 210
ApeKI GCWGC 2 cut(s) 230, 233
AspLEI GCGC 2 cut(s) 132, 180
BaeI ACNNNNGTAYC 2 cut(s) 111, 144
BanII GRGCYC 1 cut(s) 319
BbvI GCAGC 2 cut(s) 242, 245
BcoDI GTCTC 2 cut(s) 185, 218
BfaI CTAG 3 cut(s) 116, 308, 322
BisI GCNGC 2 cut(s) 231, 234
BlsI GCNGC 2 cut(s) 232, 235
BmsI GCATC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 263
BpuEI CTTGAG 2 cut(s) 86, 149
BsaHI GRCGYC 1 cut(s) 94
BsaI GGTCTC 2 cut(s) 185, 218
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 72
BseDI CCNNGG 1 cut(s) 207
BseLI CCNNNNNNNGG 2 cut(s) 71, 72
BseXI GCAGC 2 cut(s) 242, 245
Bsh1236I CGCG 4 cut(s) 84, 173, 180, 270
BshFI GGCC 2 cut(s) 206, 212
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 71, 72
BsmAI GTCTC 2 cut(s) 185, 218
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 2 cut(s) 206, 212
Bso31I GGTCTC 2 cut(s) 185, 218
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 3 cut(s) 58, 168, 181
Bsp68I TCGCGA 1 cut(s) 173
BspACI CCGC 6 cut(s) 82, 98, 228, 268, 283, 319
BspANI GGCC 2 cut(s) 206, 212
BspFNI CGCG 4 cut(s) 84, 173, 180, 270
BspHI TCATGA 1 cut(s) 138
BspTNI GGTCTC 2 cut(s) 185, 218
BsrBI CCGCTC 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 58, 168, 181
BssNI GRCGYC 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 98, 319
BstFNI CGCG 4 cut(s) 84, 173, 180, 270
BstHHI GCGC 2 cut(s) 132, 180
BstKTI GATC 3 cut(s) 61, 171, 184
BstMAI GTCTC 2 cut(s) 185, 218
BstMBI GATC 3 cut(s) 58, 168, 181
BstUI CGCG 4 cut(s) 84, 173, 180, 270
BstV1I GCAGC 2 cut(s) 242, 245
BsuRI GGCC 2 cut(s) 206, 212
BtgZI GCGATG 1 cut(s) 188
BtuMI TCGCGA 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 98, 319
CciI TCATGA 1 cut(s) 138
CfoI GCGC 2 cut(s) 132, 180
CseI GACGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 219
CviAII CATG 3 cut(s) 68, 139, 187
CviJI RGCY 5 cut(s) 64, 206, 212, 236, 317
CviKI_1 RGCY 5 cut(s) 64, 206, 212, 236, 317
CviQI GTAC 1 cut(s) 219
DpnI GATC 3 cut(s) 60, 170, 183
DpnII GATC 3 cut(s) 58, 168, 181
Eco24I GRGCYC 1 cut(s) 319
Eco31I GGTCTC 2 cut(s) 185, 218
Eco57I CTGAAG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 319
FaeI CATG 3 cut(s) 71, 142, 190
FaiI YATR 5 cut(s) 69, 140, 150, 188, 198
FaqI GGGAC 1 cut(s) 88
FatI CATG 3 cut(s) 67, 138, 186
FauI CCCGC 2 cut(s) 89, 105
Fnu4HI GCNGC 2 cut(s) 231, 234
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 2 cut(s) 231, 234
FspBI CTAG 3 cut(s) 116, 308, 322
GlaI GCGC 2 cut(s) 131, 179
GluI GCNGC 2 cut(s) 231, 234
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 2 cut(s) 206, 212
HgaI GACGC 1 cut(s) 102
HhaI GCGC 2 cut(s) 132, 180
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 3 cut(s) 71, 142, 190
Hin6I GCGC 2 cut(s) 130, 178
HinP1I GCGC 2 cut(s) 130, 178
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 3 cut(s) 139, 166, 172
Hpy99I CGWCG 2 cut(s) 56, 59
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 200
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 3 cut(s) 71, 142, 190
HspAI GCGC 2 cut(s) 130, 178
Kzo9I GATC 3 cut(s) 58, 168, 181
LpnPI CCDG 4 cut(s) 46, 188, 250, 293
Lsp1109I GCAGC 2 cut(s) 242, 245
LweI GCATC 1 cut(s) 165
MaeI CTAG 3 cut(s) 116, 308, 322
MalI GATC 3 cut(s) 60, 170, 183
MbiI CCGCTC 1 cut(s) 100
MboI GATC 3 cut(s) 58, 168, 181
MboII GAAGA 1 cut(s) 17
MfeI CAATTG 1 cut(s) 24
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 1 cut(s) 24
MnlI CCTC 6 cut(s) 79, 169, 202, 253, 265, 295
MspA1I CMGCKG 1 cut(s) 283
MunI CAATTG 1 cut(s) 24
MvnI CGCG 4 cut(s) 84, 173, 180, 270
NdeII GATC 3 cut(s) 58, 168, 181
NlaIII CATG 3 cut(s) 71, 142, 190
NmeAIII GCCGAG 2 cut(s) 232, 238
NruI TCGCGA 1 cut(s) 173
PagI TCATGA 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PkrI GCNGC 2 cut(s) 232, 235
RruI TCGCGA 1 cut(s) 173
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SatI GCNGC 2 cut(s) 231, 234
Sau3AI GATC 3 cut(s) 58, 168, 181
SduI GDGCHC 1 cut(s) 319
SetI ASST 6 cut(s) 90, 117, 149, 161, 197, 249
SfaNI GCATC 1 cut(s) 165
SmlI CTYRAG 2 cut(s) 101, 164
SmoI CTYRAG 2 cut(s) 101, 164
Sse9I AATT 1 cut(s) 24
SsiI CCGC 6 cut(s) 82, 98, 228, 268, 283, 319
SspMI CTAG 3 cut(s) 116, 308, 322
TaqI TCGA 1 cut(s) 241
TaqII GACCGA 1 cut(s) 124
TasI AATT 1 cut(s) 24
TseI GCWGC 2 cut(s) 230, 233
TspDTI ATGAA 1 cut(s) 84
XspI CTAG 3 cut(s) 116, 308, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.