Rmu_sc0003246.1_g000004

Belongs to the RNase T2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003246.1
OG0000863
Physical Location & Seq
Forward (+)
20451 .. 20852
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003246.1_g000004.1.cds

Sequence Viewer

Length: 402 bp
atgccccctaaccctacgtcgggaggtcctactgcccccactcatggcaacaccagcatagaccctcagacgatctacttgaactccccctcttttcaaggccaacttggcgccgtatcgactccccaacccattgctggcgcggcgggaacctcggatgccaacactgctaccactgccaacatatctccacccgatcccaatactcagctattgctccaaatgagcgaggccatcacctccttacaggcacgagtggaaagcgctgaaagcagagccgactggcagccgaacacggctggtttccagggaaatacaagacccttcaacgccaagatacaggccgagaagcacccaccagaggccaagcccctcaacatcgaaaagtataattggacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ribonuclease_T2

Protein Analysis

133

Amino Acids

14.01

Weight (kDa)

5.16

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 110
AccII CGCG 1 cut(s) 143
AciI CCGC 2 cut(s) 143, 146
AclWI GGATC 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 111
AfeI AGCGCT 1 cut(s) 265
AfiI CCNNNNNNNGG 5 cut(s) 19, 20, 44, 137, 361
AgsI TTSAA 3 cut(s) 82, 98, 328
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
AlwI GGATC 1 cut(s) 191
Aor51HI AGCGCT 1 cut(s) 265
AoxI GGCC 4 cut(s) 100, 231, 342, 363
ApeKI GCWGC 1 cut(s) 286
AspLEI GCGC 3 cut(s) 113, 143, 266
AspS9I GGNCC 2 cut(s) 26, 396
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 2 cut(s) 26, 396
BanI GGYRCC 1 cut(s) 110
BauI CACGAG 1 cut(s) 252
BbvI GCAGC 1 cut(s) 298
BccI CCATC 1 cut(s) 242
BceAI ACGGC 2 cut(s) 98, 312
BciT130I CCWGG 1 cut(s) 308
BfoI RGCGCY 2 cut(s) 114, 267
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 2 cut(s) 144, 287
BlsI GCNGC 2 cut(s) 145, 288
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 2 cut(s) 26, 396
BmgT120I GGNCC 2 cut(s) 26, 396
BmiI GGNNCC 2 cut(s) 112, 151
BmrFI CCNGG 1 cut(s) 308
BmsI GCATC 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 153, 307
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 20, 44, 137, 361
Bse1I ACTGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 2 cut(s) 153, 307
BseGI GGATG 1 cut(s) 163
BseLI CCNNNNNNNGG 5 cut(s) 19, 20, 44, 137, 361
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 80, 221
BseNI ACTGG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 298
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 4 cut(s) 102, 233, 344, 365
BshNI GGYRCC 1 cut(s) 110
BslI CCNNNNNNNGG 5 cut(s) 19, 20, 44, 137, 361
BsnI GGCC 4 cut(s) 102, 233, 344, 365
Bsp143I GATC 2 cut(s) 72, 196
BspACI CCGC 2 cut(s) 143, 146
BspANI GGCC 4 cut(s) 102, 233, 344, 365
BspCNI CTCAG 2 cut(s) 79, 220
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 112, 151
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 153, 307
BssMI GATC 2 cut(s) 72, 196
BssNI GRCGYC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 308
BstACI GRCGYC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 66, 207
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 143
BstH2I RGCGCY 2 cut(s) 114, 267
BstHHI GCGC 3 cut(s) 113, 143, 266
BstKTI GATC 2 cut(s) 75, 199
BstMBI GATC 2 cut(s) 72, 196
BstMWI GCNNNNNNNGC 6 cut(s) 54, 108, 143, 167, 176, 270
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 298
BsuRI GGCC 4 cut(s) 102, 233, 344, 365
BtsCI GGATG 1 cut(s) 163
BtsI GCAGTG 2 cut(s) 165, 174
BtsIMutI CAGTG 2 cut(s) 165, 174
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 3 cut(s) 113, 143, 266
Cfr13I GGNCC 2 cut(s) 26, 396
CviAII CATG 1 cut(s) 44
CviJI RGCY 9 cut(s) 102, 211, 233, 278, 289, 299, 344, 365, 370
CviKI_1 RGCY 9 cut(s) 102, 211, 233, 278, 289, 299, 344, 365, 370
DdeI CTNAG 2 cut(s) 66, 207
DinI GGCGCC 1 cut(s) 112
DpnI GATC 2 cut(s) 74, 198
DpnII GATC 2 cut(s) 72, 196
Eco47I GGWCC 2 cut(s) 26, 396
Eco47III AGCGCT 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 26
EcoRII CCWGG 1 cut(s) 306
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
FaeI CATG 1 cut(s) 47
FaiI YATR 4 cut(s) 45, 59, 185, 390
FalI AAGNNNNNCTT 2 cut(s) 90, 122
FatI CATG 1 cut(s) 43
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 144, 287
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 144, 287
GlaI GCGC 3 cut(s) 112, 142, 265
GluI GCNGC 2 cut(s) 144, 287
HaeII RGCGCY 2 cut(s) 114, 267
HaeIII GGCC 4 cut(s) 102, 233, 344, 365
HhaI GCGC 3 cut(s) 113, 143, 266
Hin1I GRCGYC 1 cut(s) 111
Hin1II CATG 1 cut(s) 47
Hin6I GCGC 3 cut(s) 111, 141, 264
HinP1I GCGC 3 cut(s) 111, 141, 264
HinfI GANTC 1 cut(s) 121
HphI GGTGA 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 69, 157
Hpy188III TCNNGA 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 334
HpyCH4IV ACGT 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 6 cut(s) 54, 108, 143, 167, 176, 270
HpyF3I CTNAG 2 cut(s) 66, 207
HpySE526I ACGT 1 cut(s) 17
Hsp92I GRCGYC 1 cut(s) 111
Hsp92II CATG 1 cut(s) 47
HspAI GCGC 3 cut(s) 111, 141, 264
KasI GGCGCC 1 cut(s) 110
Kzo9I GATC 2 cut(s) 72, 196
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 9 cut(s) 67, 123, 233, 268, 285, 293, 320, 326, 372
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 1 cut(s) 148
MaeII ACGT 1 cut(s) 17
MalI GATC 2 cut(s) 74, 198
MboI GATC 2 cut(s) 72, 196
MluCI AATT 1 cut(s) 391
Mly113I GGCGCC 1 cut(s) 111
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 8 cut(s) 17, 75, 100, 163, 223, 250, 355, 383
MspR9I CCNGG 1 cut(s) 308
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 6 cut(s) 54, 108, 143, 167, 176, 270
NarI GGCGCC 1 cut(s) 111
NdeII GATC 2 cut(s) 72, 196
NlaIII CATG 1 cut(s) 47
NlaIV GGNNCC 2 cut(s) 112, 151
NmeAIII GCCGAG 1 cut(s) 370
PkrI GCNGC 2 cut(s) 145, 288
PleI GAGTC 1 cut(s) 115
PluTI GGCGCC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 2 cut(s) 112, 151
PspPI GGNCC 2 cut(s) 26, 396
PspPPI RGGWCCY 1 cut(s) 26
SatI GCNGC 2 cut(s) 144, 287
Sau3AI GATC 2 cut(s) 72, 196
Sau96I GGNCC 2 cut(s) 26, 396
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 308
SetI ASST 6 cut(s) 20, 28, 155, 213, 242, 401
SfaNI GCATC 1 cut(s) 148
SfoI GGCGCC 1 cut(s) 112
SinI GGWCC 2 cut(s) 26, 396
Sse9I AATT 1 cut(s) 391
SsiI CCGC 2 cut(s) 143, 146
SspDI GGCGCC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 306
TaiI ACGT 1 cut(s) 20
TaqI TCGA 2 cut(s) 119, 381
TasI AATT 1 cut(s) 391
TauI GCSGC 1 cut(s) 146
TscAI CASTG 2 cut(s) 172, 181
TseI GCWGC 1 cut(s) 286
TspRI CASTG 2 cut(s) 172, 181
VpaK11BI GGWCC 2 cut(s) 26, 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.