Rmu_sc0011734.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011734.1
OG0000863
Physical Location & Seq
Reverse (-)
14289 .. 14651
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011734.1_g000008.1.cds

Sequence Viewer

Length: 363 bp
ctggaagaacgacacactctaccaactgctaccagcacccccgatacacaccaagacgatcagccccatgaagggacaacccgcgaggtcagacgcctgctcaagtttctcaacctagatattgaagcgcgctcggtcatgactacctatgccaccacctcactcgagatcgcgatgcgcgatctcatggagacgtgtggacaggctgaggccgagcgtacagaggccgcagcagcccgtcgaaaggttgaaaataatgaggcactccgcgaggcactccagcggagagtagcgaataacgaggcactagacagagcccgctaccaaccatcggtggtgtctcgacacctggggccgtcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.58

Weight (kDa)

5.83

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000863)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29436 FvH4_4g08647
prunus_persica Prupe.1G244600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0041081 RchiOBHm_Chr7g0227381
rosa_multiflora Rmu_co8094356.1_g000001 Rmu_co8097010.1_g000001 Rmu_co8307317.1_g000001 Rmu_co8331341.1_g000001 Rmu_co8353833.1_g000001 Rmu_co8426601.1_g000001 Rmu_co8464885.1_g000001 Rmu_sc0000161.1_g000045 Rmu_sc0000367.1_g000181 Rmu_sc0000438.1_g000020 Rmu_sc0000637.1_g000008 Rmu_sc0000706.1_g000036 Rmu_sc0000745.1_g000002 Rmu_sc0000964.1_g000007 Rmu_sc0001016.1_g000045 Rmu_sc0001190.1_g000046 Rmu_sc0002014.1_g000040 Rmu_sc0002229.1_g000012 Rmu_sc0002279.1_g000021 Rmu_sc0002279.1_g000049 Rmu_sc0002308.1_g000074 Rmu_sc0002482.1_g000017 Rmu_sc0002809.1_g000002 Rmu_sc0003147.1_g000020 Rmu_sc0003226.1_g000065 Rmu_sc0003246.1_g000004 Rmu_sc0003260.1_g000011 Rmu_sc0003441.1_g000081 Rmu_sc0003895.1_g000019 Rmu_sc0004228.1_g000001 Rmu_sc0004646.1_g000038 Rmu_sc0004688.1_g000018 Rmu_sc0005389.1_g000016 Rmu_sc0005537.1_g000011 Rmu_sc0005954.1_g000010 Rmu_sc0006021.1_g000020 Rmu_sc0006695.1_g000056 Rmu_sc0006822.1_g000010 Rmu_sc0007877.1_g000013 Rmu_sc0008049.1_g000067 Rmu_sc0008691.1_g000004 Rmu_sc0009206.1_g000002 Rmu_sc0011734.1_g000008 Rmu_sc0012136.1_g000012 Rmu_sc0012746.1_g000018 Rmu_sc0013612.1_g000011 Rmu_sc0016149.1_g000005 Rmu_sc0018867.1_g000011 Rmu_sc0020611.1_g000002 Rmu_sc0021291.1_g000004 Rmu_sc0021291.1_g000005 Rmu_sc0022400.1_g000007 Rmu_sc0025427.1_g000001 Rmu_sc0027953.1_g000002 Rmu_sc0033748.1_g000002 Rmu_ssc0000072.1_g000004 Rmu_ssc0000197.1_g000082
rosa_roxburghii Rroxscaffold_4G00282700 Rroxscaffold_5G00374470 Rroxscaffold_7G00183200
rosa_rugosa Rorug02G0187100 Rorug05G0255100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 84, 130, 173, 180, 270
AciI CCGC 5 cut(s) 82, 228, 268, 283, 319
AcyI GRCGYC 1 cut(s) 94
AfaI GTAC 1 cut(s) 220
AfiI CCNNNNNNNGG 4 cut(s) 71, 72, 244, 331
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 2 cut(s) 125, 251
AjiI CACGTC 1 cut(s) 195
AjnI CCWGG 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 185, 345
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 3 cut(s) 210, 225, 353
ApeKI GCWGC 2 cut(s) 230, 233
AspLEI GCGC 3 cut(s) 130, 132, 180
AspS9I GGNCC 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 164
BanII GRGCYC 1 cut(s) 319
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 242, 245
BccI CCATC 1 cut(s) 337
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 185, 345
BfaI CTAG 2 cut(s) 116, 308
BisI GCNGC 3 cut(s) 228, 231, 234
BlsI GCNGC 3 cut(s) 229, 232, 235
Bme1390I CCNGG 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 86
BsaHI GRCGYC 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 349
Bsc4I CCNNNNNNNGG 4 cut(s) 71, 72, 244, 331
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 349
BseLI CCNNNNNNNGG 4 cut(s) 71, 72, 244, 331
BseMII CTCAG 1 cut(s) 198
BsePI GCGCGC 1 cut(s) 128
BseXI GCAGC 2 cut(s) 242, 245
Bsh1236I CGCG 5 cut(s) 84, 130, 173, 180, 270
BshFI GGCC 3 cut(s) 212, 227, 355
BsiHKCI CYCGRG 1 cut(s) 164
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 4 cut(s) 71, 72, 244, 331
BsmAI GTCTC 2 cut(s) 185, 345
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 3 cut(s) 212, 227, 355
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 3 cut(s) 58, 168, 181
Bsp68I TCGCGA 1 cut(s) 173
BspACI CCGC 5 cut(s) 82, 228, 268, 283, 319
BspANI GGCC 3 cut(s) 212, 227, 355
BspCNI CTCAG 1 cut(s) 199
BspFNI CGCG 5 cut(s) 84, 130, 173, 180, 270
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 349
BssHII GCGCGC 1 cut(s) 128
BssMI GATC 3 cut(s) 58, 168, 181
BssNI GRCGYC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 94
BstC8I GCNNGC 3 cut(s) 98, 130, 319
BstDEI CTNAG 1 cut(s) 207
BstFNI CGCG 5 cut(s) 84, 130, 173, 180, 270
BstHHI GCGC 3 cut(s) 130, 132, 180
BstKTI GATC 3 cut(s) 61, 171, 184
BstMAI GTCTC 2 cut(s) 185, 345
BstMBI GATC 3 cut(s) 58, 168, 181
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstUI CGCG 5 cut(s) 84, 130, 173, 180, 270
BstV1I GCAGC 2 cut(s) 242, 245
BsuRI GGCC 3 cut(s) 212, 227, 355
BtgZI GCGATG 1 cut(s) 188
BtrI CACGTC 1 cut(s) 195
BtuMI TCGCGA 1 cut(s) 173
Cac8I GCNNGC 3 cut(s) 98, 130, 319
CciI TCATGA 1 cut(s) 138
CfoI GCGC 3 cut(s) 130, 132, 180
Cfr13I GGNCC 1 cut(s) 353
CseI GACGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 219
CviAII CATG 3 cut(s) 68, 139, 187
CviJI RGCY 7 cut(s) 64, 206, 212, 227, 236, 317, 355
CviKI_1 RGCY 7 cut(s) 64, 206, 212, 227, 236, 317, 355
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 1 cut(s) 207
DpnI GATC 3 cut(s) 60, 170, 183
DpnII GATC 3 cut(s) 58, 168, 181
Eco24I GRGCYC 1 cut(s) 319
Eco88I CYCGRG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 185
FaeI CATG 3 cut(s) 71, 142, 190
FaiI YATR 4 cut(s) 69, 140, 150, 188
FaqI GGGAC 1 cut(s) 88
FatI CATG 3 cut(s) 67, 138, 186
FauI CCCGC 2 cut(s) 89, 326
Fnu4HI GCNGC 3 cut(s) 228, 231, 234
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 3 cut(s) 228, 231, 234
FspBI CTAG 2 cut(s) 116, 308
GlaI GCGC 3 cut(s) 129, 131, 179
GluI GCNGC 3 cut(s) 228, 231, 234
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 3 cut(s) 212, 227, 355
HgaI GACGC 1 cut(s) 102
HhaI GCGC 3 cut(s) 130, 132, 180
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 3 cut(s) 71, 142, 190
Hin6I GCGC 3 cut(s) 128, 130, 178
HinP1I GCGC 3 cut(s) 128, 130, 178
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 4 cut(s) 139, 166, 172, 342
Hpy8I GTNNAC 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 65
HpyCH4IV ACGT 1 cut(s) 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 3 cut(s) 71, 142, 190
HspAI GCGC 3 cut(s) 128, 130, 178
Kzo9I GATC 3 cut(s) 58, 168, 181
LpnPI CCDG 5 cut(s) 46, 110, 188, 293, 335
Lsp1109I GCAGC 2 cut(s) 242, 245
LweI GCATC 1 cut(s) 165
MaeI CTAG 2 cut(s) 116, 308
MaeII ACGT 1 cut(s) 194
MalI GATC 3 cut(s) 60, 170, 183
MboI GATC 3 cut(s) 58, 168, 181
MboII GAAGA 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 319
MnlI CCTC 7 cut(s) 79, 169, 202, 217, 253, 265, 295
MspA1I CMGCKG 1 cut(s) 283
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 5 cut(s) 84, 130, 173, 180, 270
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 3 cut(s) 58, 168, 181
NlaIII CATG 3 cut(s) 71, 142, 190
NlaIV GGNNCC 1 cut(s) 354
NmeAIII GCCGAG 1 cut(s) 238
NruI TCGCGA 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 164
PagI TCATGA 1 cut(s) 138
PauI GCGCGC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PkrI GCNGC 3 cut(s) 229, 232, 235
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 1 cut(s) 353
PteI GCGCGC 1 cut(s) 128
RruI TCGCGA 1 cut(s) 173
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SatI GCNGC 3 cut(s) 228, 231, 234
Sau3AI GATC 3 cut(s) 58, 168, 181
Sau96I GGNCC 1 cut(s) 353
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 319
SetI ASST 7 cut(s) 90, 117, 149, 161, 197, 249, 351
SfaNI GCATC 1 cut(s) 165
Sfr274I CTCGAG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 101, 164
SmoI CTYRAG 2 cut(s) 101, 164
SsiI CCGC 5 cut(s) 82, 228, 268, 283, 319
SspMI CTAG 2 cut(s) 116, 308
StyD4I CCNGG 1 cut(s) 348
TaiI ACGT 1 cut(s) 197
TaqI TCGA 3 cut(s) 165, 241, 343
TaqII GACCGA 1 cut(s) 124
TauI GCSGC 1 cut(s) 230
TseI GCWGC 2 cut(s) 230, 233
TspDTI ATGAA 1 cut(s) 84
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 2 cut(s) 116, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.