Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

22698234 .. 22699130

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29511.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGTGCAACGAGTTTCAACGGTTGGTTGAGGAGGCAAACAGACCGTTGTATGCCGGTTGTAAGTCGCACACCAAGTTCAATGCACTTCTACGATCTTTTGTATGCTTTTCTCTTTTTTAGGAGTTTAAGTGGGCTTCTTTCGCCATTGCCAATTGGTGAAGGTGAAAATTGCATTCCAATTGTTCGACGAAATGCCTCTGAGGAACTGAAATTTTCACTTATAGCTGCATTTCTTGAGGAACTTCCGCCAGCAGCTGTGAGGGAGTACGGACATCAAATGGCAGACCATATATTTCTTAAGGTTCCAAATTGTGGAGAACATTGGAAAATAGAATTGAGAACATCACCTCGTGGTGACCGGATGTGGTTAGAGAAGGGATGGGAAGAGTTTGCCAGCTTTTACTTACTGGACCAACGCGACATGGCAATTGTCACATCTTGGTTCTTAAGTCAATTTGCGGTTATTTACTTTGGGTTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

162

Amino Acids

18.68

Weight (kDa)

6.08

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccII	CGCG	1 cut(s)	420
AciI	CCGC	2 cut(s)	248, 461
AcsI	RAATTY	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	353
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	314
AflII	CTTAAG	2 cut(s)	299, 448
AgsI	TTSAA	2 cut(s)	19, 81
AluBI	AGCT	3 cut(s)	227, 257, 399
AluI	AGCT	3 cut(s)	227, 257, 399
AlwNI	CAGNNNCTG	1 cut(s)	257
ApeKI	GCWGC	2 cut(s)	227, 254
ApoI	RAATTY	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	4 cut(s)	170, 176, 339, 368
AvaII	GGWCC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	214, 266
BccI	CCATC	1 cut(s)	375
BfrI	CTTAAG	2 cut(s)	299, 448
BisI	GCNGC	2 cut(s)	228, 255
BlsI	GCNGC	2 cut(s)	229, 256
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	146
BseGI	GGATG	2 cut(s)	369, 386
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	414
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	214, 266
Bsh1236I	CGCG	1 cut(s)	420
BsiSI	CCGG	2 cut(s)	56, 361
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	2 cut(s)	248, 461
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	306
BspTI	CTTAAG	2 cut(s)	299, 448
BsrDI	GCAATG	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	414
BssAI	RCCGGY	1 cut(s)	55
BssMI	GATC	1 cut(s)	94
BssSI	CACGAG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	23, 47
Bst6I	CTCTTC	1 cut(s)	381
BstAFI	CTTAAG	2 cut(s)	299, 448
BstC8I	GCNNGC	2 cut(s)	252, 397
BstDEI	CTNAG	1 cut(s)	201
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	369, 386
BstFNI	CGCG	1 cut(s)	420
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	142
BstPI	GGTNACC	1 cut(s)	356
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	214, 266
BtsCI	GGATG	2 cut(s)	369, 386
Cac8I	GCNNGC	2 cut(s)	252, 397
CaiI	CAGNNNCTG	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	424
CviJI	RGCY	4 cut(s)	136, 227, 257, 399
CviKI_1	RGCY	4 cut(s)	136, 227, 257, 399
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
DraIII	CACNNNGTG	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	412
Eco91I	GGTNACC	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	356
FaeI	CATG	1 cut(s)	427
FaiI	YATR	6 cut(s)	53, 105, 224, 291, 293, 425
FatI	CATG	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	228, 255
FokI	GGATG	2 cut(s)	376, 393
Fsp4HI	GCNGC	2 cut(s)	228, 255
GluI	GCNGC	2 cut(s)	228, 255
HapII	CCGG	2 cut(s)	56, 361
Hin1II	CATG	1 cut(s)	427
HpaII	CCGG	2 cut(s)	56, 361
HphI	GGTGA	4 cut(s)	170, 176, 339, 368
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	1 cut(s)	236
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	155, 370
HpyCH4III	ACNGT	2 cut(s)	23, 47
HpyCH4V	TGCA	4 cut(s)	8, 85, 174, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	142
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	5 cut(s)	69, 264, 374, 395, 409
Lsp1109I	GCAGC	2 cut(s)	214, 266
MaeIII	GTNAC	3 cut(s)	356, 433, 477
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	398
MfeI	CAATTG	3 cut(s)	153, 180, 429
MluCI	AATT	8 cut(s)	153, 169, 180, 212, 310, 335, 429, 455
MnlI	CCTC	7 cut(s)	24, 27, 196, 208, 232, 255, 360
MseI	TTAA	3 cut(s)	128, 300, 449
MspA1I	CMGCKG	1 cut(s)	257
MspCI	CTTAAG	2 cut(s)	299, 448
MspI	CCGG	2 cut(s)	56, 361
MunI	CAATTG	3 cut(s)	153, 180, 429
Mva1269I	GAATGC	1 cut(s)	174
MvnI	CGCG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	142
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	2 cut(s)	356, 433
PctI	GAATGC	1 cut(s)	174
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	229, 256
PspEI	GGTNACC	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	3 cut(s)	128, 300, 449
SatI	GCNGC	2 cut(s)	228, 255
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	412
SetI	ASST	6 cut(s)	166, 229, 259, 306, 352, 401
SinI	GGWCC	1 cut(s)	412
SmlI	CTYRAG	3 cut(s)	236, 299, 448
SmoI	CTYRAG	3 cut(s)	236, 299, 448
Sse9I	AATT	8 cut(s)	153, 169, 180, 212, 310, 335, 429, 455
SsiI	CCGC	2 cut(s)	248, 461
TaaI	ACNGT	2 cut(s)	23, 47
TaqI	TCGA	1 cut(s)	187
TasI	AATT	8 cut(s)	153, 169, 180, 212, 310, 335, 429, 455
Tru1I	TTAA	3 cut(s)	128, 300, 449
Tru9I	TTAA	3 cut(s)	128, 300, 449
TseFI	GTSAC	2 cut(s)	356, 433
TseI	GCWGC	2 cut(s)	227, 254
Tsp45I	GTSAC	2 cut(s)	356, 433
TspGWI	ACGGA	1 cut(s)	285
Van91I	CCANNNNNTGG	1 cut(s)	314
Vha464I	CTTAAG	2 cut(s)	299, 448
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.