Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

3899468 .. 3900209

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG050700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATCGATATGGAAATAGACTACCCTATTCATGGAGGAGGAGTGCCAAAAAGGAAAAGAACAGGAGGTAATCGAAACACCCCTCCTGCCTATTTAGAGGCTAGAACCAGTCCAACTTCCTCTGGATCCTCGACTGATGAAAACCAAAATGATCTTTCCACAGCTACTAGTTTCAAATCTGACAAGCTACTTCTTATGCTCAGAATGACAGCTACATATATACGCTGCTCTGGCGCGTATATTAGTCCATCTTTTGCCAAGGAACATGTCTGCAGACCAGGCACTTCATGCAATGTGACCCTACAAATTTCAAAGGAGAAAGTTTGGACTGCTCAATGCACTATTGGTGAAAACAGTGAGCACAAACTATATGCAAGAGTTTCAGGTGCTGGTTGGAAGGCATTTAAGGAGGACAATCATCTGGAAGTACATGATGTCTGTGTGTTTGAGTTTATTGAGGAGCGTACATTCAAAGTTTCCATAATCCGAGCTAAAGTGAAGATCAATAAGCAAGATGAGGAAAGTGAAGACAAGCTCATGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

181

Amino Acids

20.29

Weight (kDa)

7.65

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	70 - 164	9.3e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	236
AclWI	GGATC	2 cut(s)	120, 133
AcsI	RAATTY	1 cut(s)	306
AfaI	GTAC	2 cut(s)	429, 466
AfiI	CCNNNNNNNGG	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	175, 312, 472
AhlI	ACTAGT	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	5 cut(s)	164, 187, 212, 491, 535
AluI	AGCT	5 cut(s)	164, 187, 212, 491, 535
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	120, 133
AlwNI	CAGNNNCTG	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	359
BamHI	GGATCC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	256
BciT130I	CCWGG	1 cut(s)	279
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	2 cut(s)	102, 168
BfmI	CTRYAG	1 cut(s)	271
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	534
Bsa29I	ATCGAT	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	279
BseCI	ATCGAT	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	3 cut(s)	51, 54, 473
BseXI	GCAGC	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	363
BslI	CCNNNNNNNGG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	4 cut(s)	3, 125, 151, 501
BspCNI	CTCAG	1 cut(s)	213
BspDI	ATCGAT	1 cut(s)	6
BspFNI	CGCG	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	537
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	275
BspPI	GGATC	2 cut(s)	120, 133
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	4 cut(s)	3, 125, 151, 501
BssT1I	CCWWGG	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	288
BstDEI	CTNAG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	236
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	4 cut(s)	6, 128, 154, 504
BstMBI	GATC	4 cut(s)	3, 125, 151, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 279, 288
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	271
BstUI	CGCG	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	212
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	6
BsuTUI	ATCGAT	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	361
CaiI	CAGNNNCTG	1 cut(s)	389
CciI	TCATGA	1 cut(s)	537
CfoI	GCGC	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	6
Csp6I	GTAC	2 cut(s)	428, 465
CviAII	CATG	5 cut(s)	32, 266, 288, 431, 538
CviJI	RGCY	6 cut(s)	101, 164, 187, 212, 491, 535
CviKI_1	RGCY	6 cut(s)	101, 164, 187, 212, 491, 535
CviQI	GTAC	2 cut(s)	428, 465
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	4 cut(s)	5, 127, 153, 503
DpnII	GATC	4 cut(s)	3, 125, 151, 501
Eco130I	CCWWGG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	5 cut(s)	35, 269, 291, 434, 541
FatI	CATG	5 cut(s)	31, 265, 287, 430, 537
Fnu4HI	GCNGC	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	226
FspBI	CTAG	2 cut(s)	102, 168
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	5 cut(s)	35, 269, 291, 434, 541
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HphI	GGTGA	1 cut(s)	359
Hpy188I	TCNGA	3 cut(s)	181, 203, 488
Hpy188III	TCNNGA	3 cut(s)	123, 422, 538
HpyAV	CCTTC	1 cut(s)	391
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	4 cut(s)	273, 291, 339, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 279, 288
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	5 cut(s)	35, 269, 291, 434, 541
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	4 cut(s)	3, 125, 151, 501
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	102, 168
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	4 cut(s)	5, 127, 153, 503
MboI	GATC	4 cut(s)	3, 125, 151, 501
MboII	GAAGA	2 cut(s)	511, 539
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	1 cut(s)	306
MmeI	TCCRAC	2 cut(s)	137, 374
MseI	TTAA	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	231, 279, 288
NdeII	GATC	4 cut(s)	3, 125, 151, 501
NlaIII	CATG	5 cut(s)	35, 269, 291, 434, 541
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	295
NspI	RCATGY	1 cut(s)	269
PagI	TCATGA	1 cut(s)	537
PciI	ACATGT	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	227
PscI	ACATGT	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	275
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	125
RsaI	GTAC	2 cut(s)	429, 466
RsaNI	GTAC	2 cut(s)	428, 465
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	4 cut(s)	3, 125, 151, 501
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	7 cut(s)	70, 166, 189, 214, 388, 493, 537
SfcI	CTRYAG	1 cut(s)	271
SpeI	ACTAGT	1 cut(s)	167
Sse9I	AATT	1 cut(s)	306
SspMI	CTAG	2 cut(s)	102, 168
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	356
TaqI	TCGA	3 cut(s)	6, 73, 131
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	427
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	20, 153, 276
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	2 cut(s)	102, 168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.