Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

40755292 .. 40757708

Gene Structure 2417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGCCACAATGTCACGCCCAATGGCTTCTCGGAGCAACAGAGAGGGAAGAAGACATGCCTTCCCAGTGGACTCTCCAAGCTTCTGCTTGAAGATTGTTACTGCTGTGGATCTTCAAGATGGGAAGGAACTTCCAGAGCCAGCTGTGACGAAGTATGGCAATTGTATGGCAGACTCCATATTCCTCAAGGTTCCCAATTGCGGAACATCATGGCCAGTAGAACTGAAAAAAACGATTCGTGGTAGCCGAATCTGGTTACAAAAAGGATGGGAACGATTCACAGACTTTTACTCCATAGACCAAGATTACTTCATAGTGTTCAGCTATGAAGGCGAACATTCTTATTTCCAAGTACACATTTTCAACTGCAACAATATGGAAATAGGTTACCCAATTTGTGGAGTCAGTAACCGATGCATTCTTCATGGTATTAATCATGGGAATCAAACAGGAGCTGGTGGATGCATGTCTACACCCAATTCAAAAGGTGCCTCCCTTCCCTCTGCATCATCTGCTGGCAGAGACCAAAACAATGACAACCAACGTGACTTTTATGGAGCTAACAATTTCAAATTCGGGGACAAGCCTAGTTTTCGGGTCACAATGACTGAAAAATACTTATCATCTTTCTTGAGAGTACCTTCGGATTTCACCATCGAACATCTGTGTGAAATAGGGTCTCATTCTACTGTGACCTTACAGACTTCAGGTGAGAGAACTTGGACTGTTCAGTGTGCTGTCAGCAAATGTGGGAAAAATGCAAGATTCAATCGTGCTAGTTGGAGAGTATTTGTGAAGGGCAATCAATTCGAAGCAGATGATGATTGTCTGTTTGAGTTGATAGGCGAACGCATGCTCAAAGTCAACATATCCCGAGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

294

Amino Acids

33.06

Weight (kDa)

8.45

Isoelectric Point (pI)

36.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	42 - 122	1.1e-08	B3 DNA binding domain
B3	PF02362	200 - 293	6e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	488
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	470
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	2 cut(s)	3, 212
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	1 cut(s)	690
AfaI	GTAC	2 cut(s)	354, 639
AfiI	CCNNNNNNNGG	2 cut(s)	200, 398
AgsI	TTSAA	6 cut(s)	91, 116, 364, 483, 571, 769
AluBI	AGCT	6 cut(s)	81, 143, 324, 455, 560, 878
AluI	AGCT	6 cut(s)	81, 143, 324, 455, 560, 878
Alw26I	GTCTC	2 cut(s)	516, 684
AlwI	GGATC	1 cut(s)	117
AlwNI	CAGNNNCTG	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	873
AoxI	GGCC	2 cut(s)	3, 212
ApoI	RAATTY	1 cut(s)	572
AseI	ATTAAT	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	643, 722
AsuII	TTCGAA	1 cut(s)	810
AvaI	CYCGRG	1 cut(s)	873
BalI	TGGCCA	2 cut(s)	5, 214
BanI	GGYRCC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	58
BccI	CCATC	3 cut(s)	113, 261, 662
BcgI	CGANNNNNNTGC	2 cut(s)	790, 824
BcoDI	GTCTC	2 cut(s)	516, 684
BfaI	CTAG	2 cut(s)	588, 777
BmeT110I	CYCGRG	1 cut(s)	873
BmiI	GGNNCC	2 cut(s)	192, 490
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	3 cut(s)	404, 452, 515
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	58
Bpu14I	TTCGAA	1 cut(s)	810
BpuEI	CTTGAG	2 cut(s)	170, 652
BsaI	GGTCTC	2 cut(s)	516, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 398
Bse1I	ACTGG	2 cut(s)	65, 215
BseGI	GGATG	2 cut(s)	272, 467
BseLI	CCNNNNNNNGG	2 cut(s)	200, 398
BseNI	ACTGG	2 cut(s)	65, 215
BshFI	GGCC	2 cut(s)	5, 214
BshNI	GGYRCC	1 cut(s)	488
BsiHKCI	CYCGRG	1 cut(s)	873
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	2 cut(s)	200, 398
BsmAI	GTCTC	2 cut(s)	516, 684
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	5, 214
Bso31I	GGTCTC	2 cut(s)	516, 684
BsoBI	CYCGRG	1 cut(s)	873
Bsp119I	TTCGAA	1 cut(s)	810
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	5, 214
BspLI	GGNNCC	2 cut(s)	192, 490
BspPI	GGATC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	810
BspT107I	GGYRCC	1 cut(s)	488
BspTNI	GGTCTC	2 cut(s)	516, 684
BsrI	ACTGG	2 cut(s)	65, 215
BssMI	GATC	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	691, 727
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBI	TTCGAA	1 cut(s)	810
BstC8I	GCNNGC	3 cut(s)	141, 517, 854
BstEII	GGTNACC	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	272, 467
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	2 cut(s)	516, 684
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 512
BstNSI	RCATGY	3 cut(s)	59, 469, 856
BstPI	GGTNACC	1 cut(s)	386
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	5, 214
BtsCI	GGATG	2 cut(s)	272, 467
BtsIMutI	CAGTG	2 cut(s)	72, 737
Cac8I	GCNNGC	3 cut(s)	141, 517, 854
CaiI	CAGNNNCTG	1 cut(s)	455
Csp6I	GTAC	2 cut(s)	353, 638
CviAII	CATG	6 cut(s)	56, 210, 425, 437, 466, 853
CviQI	GTAC	2 cut(s)	353, 638
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
EaeI	YGGCCR	2 cut(s)	3, 212
Eco31I	GGTCTC	2 cut(s)	516, 684
Eco57I	CTGAAG	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	873
Eco91I	GGTNACC	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	386
EcoT22I	ATGCAT	2 cut(s)	419, 467
FaeI	CATG	6 cut(s)	59, 213, 428, 440, 469, 856
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	6 cut(s)	55, 209, 424, 436, 465, 852
FblI	GTMKAC	1 cut(s)	470
FokI	GGATG	2 cut(s)	279, 474
FspBI	CTAG	2 cut(s)	588, 777
HaeIII	GGCC	2 cut(s)	5, 214
Hin1II	CATG	6 cut(s)	59, 213, 428, 440, 469, 856
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	8 cut(s)	71, 173, 235, 249, 276, 402, 442, 765
HphI	GGTGA	2 cut(s)	643, 722
Hpy166II	GTNNAC	4 cut(s)	70, 355, 471, 865
Hpy188I	TCNGA	2 cut(s)	33, 646
Hpy188III	TCNNGA	4 cut(s)	116, 134, 631, 873
Hpy8I	GTNNAC	4 cut(s)	70, 355, 471, 865
HpyAV	CCTTC	6 cut(s)	70, 118, 323, 506, 651, 790
HpyCH4III	ACNGT	2 cut(s)	691, 727
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	5 cut(s)	369, 417, 465, 506, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 512
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	6 cut(s)	59, 213, 428, 440, 469, 856
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	3 cut(s)	33, 452, 557
LpnPI	CCDG	9 cut(s)	78, 147, 153, 228, 238, 435, 441, 501, 693
LweI	GCATC	3 cut(s)	404, 452, 515
MaeI	CTAG	2 cut(s)	588, 777
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	9 cut(s)	12, 97, 145, 255, 386, 407, 545, 598, 691
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MboII	GAAGA	5 cut(s)	60, 63, 103, 104, 413
MfeI	CAATTG	2 cut(s)	160, 196
MflI	RGATCY	1 cut(s)	109
MlsI	TGGCCA	2 cut(s)	5, 214
MluCI	AATT	8 cut(s)	160, 196, 393, 478, 565, 572, 806, 880
MluNI	TGGCCA	2 cut(s)	5, 214
MlyI	GAGTC	3 cut(s)	65, 167, 411
MmeI	TCCRAC	1 cut(s)	761
MnlI	CCTC	4 cut(s)	37, 194, 502, 511
Mox20I	TGGCCA	2 cut(s)	5, 214
Mph1103I	ATGCAT	2 cut(s)	419, 467
MscI	TGGCCA	2 cut(s)	5, 214
MseI	TTAA	2 cut(s)	432, 883
MslI	CAYNNNNRTG	1 cut(s)	666
Msp20I	TGGCCA	2 cut(s)	5, 214
MspA1I	CMGCKG	1 cut(s)	143
MunI	CAATTG	2 cut(s)	160, 196
Mva1269I	GAATGC	1 cut(s)	417
MwoI	GCNNNNNNNGC	2 cut(s)	330, 512
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	6 cut(s)	59, 213, 428, 440, 469, 856
NlaIV	GGNNCC	2 cut(s)	192, 490
NmuCI	GTSAC	5 cut(s)	12, 145, 545, 598, 691
NsiI	ATGCAT	2 cut(s)	419, 467
NspI	RCATGY	3 cut(s)	59, 469, 856
NspV	TTCGAA	1 cut(s)	810
PaeI	GCATGC	1 cut(s)	856
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PctI	GAATGC	1 cut(s)	417
PfeI	GAWTC	5 cut(s)	235, 249, 276, 442, 765
PflMI	CCANNNNNTGG	1 cut(s)	398
PleI	GAGTC	3 cut(s)	65, 167, 410
PpsI	GAGTC	3 cut(s)	65, 167, 410
PshBI	ATTAAT	1 cut(s)	432
PspEI	GGTNACC	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	192, 490
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	354, 639
RsaNI	GTAC	2 cut(s)	353, 638
RseI	CAYNNNNRTG	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	432, 883
Sau3AI	GATC	1 cut(s)	109
SchI	GAGTC	3 cut(s)	65, 167, 411
SfaNI	GCATC	3 cut(s)	404, 452, 515
SfuI	TTCGAA	1 cut(s)	810
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	2 cut(s)	185, 631
SmoI	CTYRAG	2 cut(s)	185, 631
SphI	GCATGC	1 cut(s)	856
Sse9I	AATT	8 cut(s)	160, 196, 393, 478, 565, 572, 806, 880
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	2 cut(s)	588, 777
TaaI	ACNGT	2 cut(s)	691, 727
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	2 cut(s)	657, 810
TasI	AATT	8 cut(s)	160, 196, 393, 478, 565, 572, 806, 880
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	5 cut(s)	235, 249, 276, 442, 765
Tru1I	TTAA	2 cut(s)	432, 883
Tru9I	TTAA	2 cut(s)	432, 883
TscAI	CASTG	2 cut(s)	72, 737
TseFI	GTSAC	5 cut(s)	12, 145, 545, 598, 691
Tsp45I	GTSAC	5 cut(s)	12, 145, 545, 598, 691
TspDTI	ATGAA	3 cut(s)	301, 342, 413
TspRI	CASTG	2 cut(s)	72, 737
Van91I	CCANNNNNTGG	1 cut(s)	398
VspI	ATTAAT	1 cut(s)	432
XapI	RAATTY	1 cut(s)	572
XceI	RCATGY	3 cut(s)	59, 469, 856
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	2 cut(s)	588, 777
Zsp2I	ATGCAT	2 cut(s)	419, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.