Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

3875347 .. 3877209

Gene Structure 1863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG050200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCACATGCTCACGTCCTATGGCTTCTTCAATTGCGAGACGTGCCCTAATTCCAGAGGACTCTCCAAGCTTCTGCATTAAGATTGTCACTGATAATGACCTCCGAGATGGGAAGGAACTTCCCGAGATGGCTGTAAACATATATCGAAACTGTATGGAAGACTCTATATTCCTCAAGGTACCAAATTATGAGACATTATGGCCAATTGAAGTGAAAAAATCAGCTCATGGCGAGCATTCTCATTTCCAAGGACGCATTTTCCATTGGAATGATGTGGAAATCGAGTACCCTATTCGCGGATCAGGAGGAACTGATGGCATACCAAAAAGGAAAAGAACAAGAGCTCATGGTGGCATGCCTAATGCTTATTTAAAAGCAGCTAGAGCCATTTCAAATTCCTCCGGATCCTCGGGTAATGAACACCAGAATGTTCTTTCCACAGCTAACAGTTTCAAATCTGACAAGCCATTCATTATGATCAAAATGACAGCTTATTACTTGCGTAGAGAAATGTTTATAAGTGCATCTTTTGCCACAAAACATCTCTGTCGAGCAGGCGCTTCTTGTGACTTGTCCCTACAGACTCCAGATATGAGAACTTGGATTGCTGATTTGATTGTGTATGAAACCACTGAGTCAAGAGTATTTGCAAAGATTAAAGGTGCTGGTTGGAAAGCATTTAAGGAGGAAAATCATCTCGAAGAAGGTGATGTCTGTGTGCTTGAGTTGATAGAGGAATGTAAATTCAGAGTTTCATATTCCGAGCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

258

Amino Acids

29.17

Weight (kDa)

7.08

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	161 - 253	1e-10	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	181
AccII	CGCG	1 cut(s)	300
AccIII	TCCGGA	1 cut(s)	404
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	3 cut(s)	310, 402, 415
AcoI	YGGCCR	2 cut(s)	3, 203
AcsI	RAATTY	2 cut(s)	397, 746
AfaI	GTAC	2 cut(s)	183, 290
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	4 cut(s)	33, 212, 396, 457
AjiI	CACGTC	2 cut(s)	17, 44
AluBI	AGCT	6 cut(s)	72, 227, 347, 383, 446, 494
AluI	AGCT	6 cut(s)	72, 227, 347, 383, 446, 494
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	34, 188
AlwI	GGATC	3 cut(s)	310, 402, 415
Ama87I	CYCGRG	2 cut(s)	125, 412
Aor13HI	TCCGGA	1 cut(s)	404
AoxI	GGCC	2 cut(s)	3, 203
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	2 cut(s)	397, 746
Asp718I	GGTACC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	563
AsuHPI	GGTGA	1 cut(s)	722
AvaI	CYCGRG	2 cut(s)	125, 412
BaeGI	GKGCMC	1 cut(s)	49
BalI	TGGCCA	2 cut(s)	5, 205
BamHI	GGATCC	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	3 cut(s)	104, 124, 311
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	2 cut(s)	34, 188
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	581
BfoI	RGCGCY	1 cut(s)	564
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
BmeT110I	CYCGRG	2 cut(s)	125, 412
BmgBI	CACGTC	2 cut(s)	17, 44
BmiI	GGNNCC	2 cut(s)	183, 409
BmsI	GCATC	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	573
BpuEI	CTTGAG	2 cut(s)	161, 746
BsaJI	CCNNGG	2 cut(s)	250, 411
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
BseAI	TCCGGA	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	250, 411
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	627
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	5, 205
BshNI	GGYRCC	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	349
BsiHKCI	CYCGRG	2 cut(s)	125, 412
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	34, 188
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	5, 205
BsoBI	CYCGRG	2 cut(s)	125, 412
Bsp1286I	GDGCHC	2 cut(s)	49, 349
Bsp13I	TCCGGA	1 cut(s)	404
Bsp143I	GATC	3 cut(s)	302, 407, 480
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	2 cut(s)	5, 205
BspCNI	CTCAG	1 cut(s)	628
BspEI	TCCGGA	1 cut(s)	404
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	183, 409
BspPI	GGATC	3 cut(s)	310, 402, 415
BspT107I	GGYRCC	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	250, 411
BssMI	GATC	3 cut(s)	302, 407, 480
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	155, 452
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	236, 359, 559
BstDEI	CTNAG	1 cut(s)	636
BstFNI	CGCG	1 cut(s)	300
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	3 cut(s)	305, 410, 483
BstMAI	GTCTC	2 cut(s)	34, 188
BstMBI	GATC	3 cut(s)	302, 407, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 386, 533
BstNSI	RCATGY	2 cut(s)	12, 361
BstSFI	CTRYAG	1 cut(s)	581
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	392
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	2 cut(s)	5, 205
BtrI	CACGTC	2 cut(s)	17, 44
BtsIMutI	CAGTG	2 cut(s)	90, 633
Cac8I	GCNNGC	3 cut(s)	236, 359, 559
CfoI	GCGC	1 cut(s)	563
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	182, 289
CviAII	CATG	4 cut(s)	9, 230, 350, 358
CviQI	GTAC	2 cut(s)	182, 289
DdeI	CTNAG	1 cut(s)	636
DpnI	GATC	3 cut(s)	304, 409, 482
DpnII	GATC	3 cut(s)	302, 407, 480
DraI	TTTAAA	1 cut(s)	375
EaeI	YGGCCR	2 cut(s)	3, 203
Ecl136II	GAGCTC	1 cut(s)	347
Eco130I	CCWWGG	1 cut(s)	250
Eco24I	GRGCYC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	347
Eco88I	CYCGRG	2 cut(s)	125, 412
EcoICRI	GAGCTC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	349
ErhI	CCWWGG	1 cut(s)	250
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	4 cut(s)	12, 233, 353, 361
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	4 cut(s)	8, 229, 349, 357
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	381
FriOI	GRGCYC	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	573
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	2 cut(s)	5, 205
HapII	CCGG	1 cut(s)	405
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	563
Hin1II	CATG	4 cut(s)	12, 233, 353, 361
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HindIII	AAGCTT	1 cut(s)	70
HinfI	GANTC	4 cut(s)	62, 164, 586, 638
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	4 cut(s)	107, 463, 752, 766
Hpy188III	TCNNGA	7 cut(s)	56, 125, 306, 405, 590, 642, 701
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	109, 701
HpyCH4III	ACNGT	2 cut(s)	155, 452
HpyCH4IV	ACGT	2 cut(s)	16, 43
HpyCH4V	TGCA	3 cut(s)	78, 527, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 386, 533
HpyF3I	CTNAG	1 cut(s)	636
HpySE526I	ACGT	2 cut(s)	16, 43
Hsp92II	CATG	4 cut(s)	12, 233, 353, 361
HspAI	GCGC	1 cut(s)	561
Kpn2I	TCCGGA	1 cut(s)	404
KpnI	GGTACC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	3 cut(s)	302, 407, 480
LpnPI	CCDG	7 cut(s)	69, 291, 418, 440, 543, 603, 654
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	1 cut(s)	536
MaeI	CTAG	1 cut(s)	384
MaeII	ACGT	2 cut(s)	16, 43
MaeIII	GTNAC	2 cut(s)	88, 569
MalI	GATC	3 cut(s)	304, 409, 482
MboI	GATC	3 cut(s)	302, 407, 480
MboII	GAAGA	3 cut(s)	21, 173, 716
MfeI	CAATTG	2 cut(s)	33, 207
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	2 cut(s)	49, 349
MlsI	TGGCCA	2 cut(s)	5, 205
MluCI	AATT	6 cut(s)	33, 51, 187, 207, 397, 746
MluNI	TGGCCA	2 cut(s)	5, 205
MlyI	GAGTC	4 cut(s)	56, 158, 580, 647
MmeI	TCCRAC	1 cut(s)	653
MnlI	CCTC	8 cut(s)	52, 113, 185, 302, 412, 421, 682, 730
Mox20I	TGGCCA	2 cut(s)	5, 205
MroI	TCCGGA	1 cut(s)	404
MscI	TGGCCA	2 cut(s)	5, 205
MseI	TTAA	4 cut(s)	81, 374, 660, 684
MslI	CAYNNNNRTG	2 cut(s)	270, 429
Msp20I	TGGCCA	2 cut(s)	5, 205
MspI	CCGG	1 cut(s)	405
MunI	CAATTG	2 cut(s)	33, 207
Mva1269I	GAATGC	1 cut(s)	238
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	44, 386, 533
NdeII	GATC	3 cut(s)	302, 407, 480
NlaIII	CATG	4 cut(s)	12, 233, 353, 361
NlaIV	GGNNCC	2 cut(s)	183, 409
NmuCI	GTSAC	2 cut(s)	88, 569
NspI	RCATGY	2 cut(s)	12, 361
PaeI	GCATGC	1 cut(s)	361
PctI	GAATGC	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	4 cut(s)	56, 158, 580, 646
PpsI	GAGTC	4 cut(s)	56, 158, 580, 646
PsiI	TTATAA	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	183, 409
PsuI	RGATCY	1 cut(s)	407
RsaI	GTAC	2 cut(s)	183, 290
RsaNI	GTAC	2 cut(s)	182, 289
RseI	CAYNNNNRTG	2 cut(s)	270, 429
SacI	GAGCTC	1 cut(s)	349
SaqAI	TTAA	4 cut(s)	81, 374, 660, 684
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	3 cut(s)	302, 407, 480
SchI	GAGTC	4 cut(s)	56, 158, 580, 647
SduI	GDGCHC	2 cut(s)	49, 349
SfaNI	GCATC	1 cut(s)	536
SfcI	CTRYAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	2 cut(s)	270, 429
SmlI	CTYRAG	2 cut(s)	176, 725
SmoI	CTYRAG	2 cut(s)	176, 725
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	6 cut(s)	33, 51, 187, 207, 397, 746
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	155, 452
TaiI	ACGT	2 cut(s)	19, 46
TaqI	TCGA	4 cut(s)	148, 285, 553, 702
TasI	AATT	6 cut(s)	33, 51, 187, 207, 397, 746
Tru1I	TTAA	4 cut(s)	81, 374, 660, 684
Tru9I	TTAA	4 cut(s)	81, 374, 660, 684
TscAI	CASTG	2 cut(s)	97, 640
TseFI	GTSAC	2 cut(s)	88, 569
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	2 cut(s)	88, 569
TspDTI	ATGAA	4 cut(s)	435, 463, 642, 747
TspRI	CASTG	2 cut(s)	97, 640
XapI	RAATTY	2 cut(s)	397, 746
XceI	RCATGY	2 cut(s)	12, 361
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.