Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

3897012 .. 3898596

Gene Structure 1585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG050600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCTACATCTTCACGTCTGTTAGCTTCTTGTTCTAGCCAGAGATGTAGAAAGGGAAAATTTCCAGACGAATTTCCAAGCTTCTGCGTAAAGATTGTCACTAATGATGACCTCAGAGATGGGAAGGTTGAACTTCCAGAGACAGCTGTGAGGAAGTATGGAAATTGTATGGCTGATCATATATTCCTTGAAGTGCCTAACTGTGGAAAGCCATGGGAAGTCGAACTCAGAACATCAGCTCTTGGTGGACGAATGTGGTTACTAAAGGGATGGCAAGAGTTTGCTAACTTTTACTCACTAGACCAAGGCTGCTTTCCAGTGTTCAGCTATGAAGGAAAACAGTCCCATTTCCAAGTACGCATTTTTCATTGGAAATGCATGGAAATGGATTACCCTATTCGTAGACGAGGTATGTGTATTTTTAGAGTTTGTTGTGTTTCTGTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

149

Amino Acids

17.27

Weight (kDa)

8.71

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	28 - 122	2.5e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	59, 71
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	131, 191
AjiI	CACGTC	1 cut(s)	17
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	5 cut(s)	26, 81, 146, 239, 327
AluI	AGCT	5 cut(s)	26, 81, 146, 239, 327
Alw26I	GTCTC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	309
ApoI	RAATTY	2 cut(s)	59, 71
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	2 cut(s)	113, 264
BclI	TGATCA	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	2 cut(s)	36, 299
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
BmgBI	CACGTC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	212, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	212, 304
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	2 cut(s)	127, 241
BseNI	ACTGG	1 cut(s)	317
BseXI	GCAGC	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	175
Bsp19I	CCATGG	1 cut(s)	212
BspCNI	CTCAG	2 cut(s)	126, 240
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	212, 304
BssMI	GATC	1 cut(s)	175
BssT1I	CCWWGG	2 cut(s)	212, 304
Bst4CI	ACNGT	2 cut(s)	203, 342
BstDEI	CTNAG	2 cut(s)	113, 227
BstDSI	CCRYGG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	356
CviAII	CATG	2 cut(s)	213, 379
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	2 cut(s)	113, 227
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	212, 304
EcoT14I	CCWWGG	2 cut(s)	212, 304
EcoT22I	ATGCAT	1 cut(s)	380
ErhI	CCWWGG	2 cut(s)	212, 304
FaeI	CATG	2 cut(s)	216, 382
FaiI	YATR	8 cut(s)	159, 170, 180, 182, 214, 330, 380, 413
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	2 cut(s)	212, 378
FbaI	TGATCA	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	2 cut(s)	36, 299
GluI	GCNGC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	216, 382
HindIII	AAGCTT	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	248, 404
Hpy188I	TCNGA	2 cut(s)	116, 230
Hpy188III	TCNNGA	2 cut(s)	65, 137
Hpy8I	GTNNAC	2 cut(s)	248, 404
HpyAV	CCTTC	2 cut(s)	118, 326
HpyCH4III	ACNGT	2 cut(s)	203, 342
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	1 cut(s)	378
HpyF3I	CTNAG	2 cut(s)	113, 227
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	216, 382
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	4 cut(s)	53, 78, 150, 330
Lsp1109I	GCAGC	1 cut(s)	296
MaeI	CTAG	2 cut(s)	36, 299
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	2 cut(s)	97, 258
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	1 cut(s)	3
MluCI	AATT	3 cut(s)	59, 71, 163
MnlI	CCTC	3 cut(s)	122, 144, 401
Mph1103I	ATGCAT	1 cut(s)	380
MslI	CAYNNNNRTG	1 cut(s)	383
MspA1I	CMGCKG	1 cut(s)	146
NcoI	CCATGG	1 cut(s)	212
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	2 cut(s)	216, 382
NmuCI	GTSAC	1 cut(s)	97
NsiI	ATGCAT	1 cut(s)	380
PkrI	GCNGC	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	383
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	1 cut(s)	175
SetI	ASST	9 cut(s)	19, 28, 83, 114, 129, 148, 241, 329, 412
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	3 cut(s)	59, 71, 163
SspMI	CTAG	2 cut(s)	36, 299
StyI	CCWWGG	2 cut(s)	212, 304
TaaI	ACNGT	2 cut(s)	203, 342
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	222
TasI	AATT	3 cut(s)	59, 71, 163
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	309
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	345, 356
TspRI	CASTG	1 cut(s)	324
XapI	RAATTY	2 cut(s)	59, 71
XmiI	GTMKAC	1 cut(s)	403
XspI	CTAG	2 cut(s)	36, 299
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.