Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

1551874 .. 1553765

Gene Structure 1892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG021600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCCACAATGTCACGCCCAATGGCTTCTCGGAGCAAGAGAGAGGGAAGAGGACATGCCTTCCCGGTGGACTCTCCAAGCTTCTGCTTGAAGATTGTTACTGCTGTGGATCTCCAAGATGGGAAGGAACTTCCAGAGCCAGCTGTGAGGAAGTATGGGAATTGTATGGCAGACTCCATATTCCTCAAGGTTCCCAATTGCGGAACATCATGGCCAGTAGAACTGAAAAAAACGATTCGTGGTAGCCGAATCTGGTTACAAAAAGGATGGGAGCAGTTCACAGACTTTTACTCCATAGACCAAGATTACTTCATAGTGTTCAGCTATGAAGGCGAACATTCTCATTTCCAAGTACACATTTTCCACTGCAACAATATGGAAATGGATTACCCAATTCGTGGAGGAGGAGTTGGTGGATGCATGTCTACACCCAATTCAAAACGTAGCTCTTTTCCCTCTGCATCATATGCTGGTAGAGACCAAAACAATGACAACCAACATGATTTTTATGGAGCTAACAATTTCATATTCGGGGACAAGCCAGGTTTTCGGATCACAATGACTGAATCATACTTGTCAGCTATATTGAGGGTACCTTCGTATTTCACCATCGAACATCTGTGTGAAATAGGGTCTTATTCCGATGTGACCTTACAAACTTCAGGTGAGAGAACTTGGACTGTTCATTGTGCAATCGACAAAAGTAGGCGAAATGGAAGATTCAATGCTGCTGGTTGGAGAGCATTTGTGCAGGACAATCAATTGAAAGCAGGTGATGATTGTCTGTTCCAGTTGATAGGCGAACGTAAGCTCAAAGTCTACGTATACCGAGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

279

Amino Acids

31.73

Weight (kDa)

8.55

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	41 - 121	2.5e-09	B3 DNA binding domain
B3	PF02362	186 - 278	2.4e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	761
Acc36I	ACCTGC	1 cut(s)	761
Acc65I	GGTACC	1 cut(s)	592
AccB1I	GGYRCC	1 cut(s)	592
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccI	GTMKAC	3 cut(s)	425, 819, 825
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	117, 560
AcoI	YGGCCR	2 cut(s)	3, 212
AcuI	CTGAAG	1 cut(s)	645
AfaI	GTAC	2 cut(s)	354, 594
AfiI	CCNNNNNNNGG	2 cut(s)	200, 398
AgsI	TTSAA	4 cut(s)	91, 438, 724, 766
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	8 cut(s)	81, 143, 324, 447, 515, 581, 811, 833
AluI	AGCT	8 cut(s)	81, 143, 324, 447, 515, 581, 811, 833
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	117, 560
AoxI	GGCC	2 cut(s)	3, 212
ApeKI	GCWGC	1 cut(s)	728
Asp718I	GGTACC	1 cut(s)	592
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	3 cut(s)	598, 677, 785
BaeI	ACNNNNGTAYC	2 cut(s)	584, 617
BalI	TGGCCA	2 cut(s)	5, 214
BanI	GGYRCC	1 cut(s)	592
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	3 cut(s)	113, 261, 617
BciT130I	CCWGG	1 cut(s)	543
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	471
BfuAI	ACCTGC	1 cut(s)	761
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	2 cut(s)	65, 543
BmiI	GGNNCC	2 cut(s)	192, 594
BmrFI	CCNGG	2 cut(s)	65, 543
BmsI	GCATC	2 cut(s)	407, 470
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	823
BsaI	GGTCTC	1 cut(s)	471
BsaXI	ACNNNNNCTCC	4 cut(s)	275, 305, 393, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 398
Bse1I	ACTGG	2 cut(s)	215, 790
BseBI	CCWGG	1 cut(s)	543
BseGI	GGATG	2 cut(s)	272, 422
BseLI	CCNNNNNNNGG	2 cut(s)	200, 398
BseNI	ACTGG	2 cut(s)	215, 790
BseRI	GAGGAG	2 cut(s)	417, 420
BseXI	GCAGC	1 cut(s)	715
BsgI	GTGCAG	1 cut(s)	770
BshFI	GGCC	2 cut(s)	5, 214
BshNI	GGYRCC	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	2 cut(s)	200, 398
BsmAI	GTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	5, 214
Bso31I	GGTCTC	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	109, 552
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	5, 214
BspLI	GGNNCC	2 cut(s)	192, 594
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	2 cut(s)	117, 560
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	215, 790
BssMI	GATC	2 cut(s)	109, 552
BssNAI	GTATAC	1 cut(s)	826
Bst1107I	GTATAC	1 cut(s)	826
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstBAI	YACGTR	1 cut(s)	823
BstC8I	GCNNGC	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	272, 422
BstKTI	GATC	2 cut(s)	112, 555
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	2 cut(s)	109, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 467
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	2 cut(s)	59, 424
BstSCI	CCNGG	2 cut(s)	63, 541
BstSNI	TACGTA	1 cut(s)	823
BstV1I	GCAGC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BstZ17I	GTATAC	1 cut(s)	826
BsuRI	GGCC	2 cut(s)	5, 214
BtsCI	GGATG	2 cut(s)	272, 422
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	364
BveI	ACCTGC	1 cut(s)	761
Cac8I	GCNNGC	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	353, 593
CviAII	CATG	4 cut(s)	56, 210, 421, 500
CviQI	GTAC	2 cut(s)	353, 593
DpnI	GATC	2 cut(s)	111, 554
DpnII	GATC	2 cut(s)	109, 552
EaeI	YGGCCR	2 cut(s)	3, 212
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	823
Eco31I	GGTCTC	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	645
EcoRII	CCWGG	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	422
FaeI	CATG	4 cut(s)	59, 213, 424, 503
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	4 cut(s)	55, 209, 420, 499
FauNDI	CATATG	1 cut(s)	466
FblI	GTMKAC	3 cut(s)	425, 819, 825
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	2 cut(s)	279, 429
Fsp4HI	GCNGC	1 cut(s)	729
GluI	GCNGC	1 cut(s)	729
HaeIII	GGCC	2 cut(s)	5, 214
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	4 cut(s)	59, 213, 424, 503
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	6 cut(s)	71, 173, 235, 249, 566, 720
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	3 cut(s)	598, 677, 785
Hpy166II	GTNNAC	6 cut(s)	70, 279, 355, 426, 820, 826
Hpy188I	TCNGA	3 cut(s)	33, 552, 643
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	6 cut(s)	70, 279, 355, 426, 820, 826
HpyAV	CCTTC	4 cut(s)	70, 118, 323, 606
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	3 cut(s)	442, 805, 822
HpyCH4V	TGCA	5 cut(s)	369, 420, 461, 692, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 467
HpySE526I	ACGT	3 cut(s)	442, 805, 822
Hsp92II	CATG	4 cut(s)	59, 213, 424, 503
KpnI	GGTACC	1 cut(s)	596
Kzo9I	GATC	2 cut(s)	109, 552
LmnI	GCTCC	3 cut(s)	33, 271, 512
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	2 cut(s)	407, 470
MaeII	ACGT	3 cut(s)	442, 805, 822
MaeIII	GTNAC	4 cut(s)	12, 97, 255, 646
MalI	GATC	2 cut(s)	111, 554
MboI	GATC	2 cut(s)	109, 552
MboII	GAAGA	3 cut(s)	60, 103, 729
MfeI	CAATTG	2 cut(s)	196, 761
MflI	RGATCY	1 cut(s)	109
MlsI	TGGCCA	2 cut(s)	5, 214
MluCI	AATT	6 cut(s)	160, 196, 393, 433, 520, 761
MluNI	TGGCCA	2 cut(s)	5, 214
MlyI	GAGTC	2 cut(s)	65, 167
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	8 cut(s)	37, 44, 141, 194, 395, 398, 466, 582
Mox20I	TGGCCA	2 cut(s)	5, 214
Mph1103I	ATGCAT	1 cut(s)	422
MscI	TGGCCA	2 cut(s)	5, 214
MslI	CAYNNNNRTG	1 cut(s)	621
Msp20I	TGGCCA	2 cut(s)	5, 214
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	2 cut(s)	65, 543
MunI	CAATTG	2 cut(s)	196, 761
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	2 cut(s)	330, 467
NciI	CCSGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	2 cut(s)	109, 552
NlaIII	CATG	4 cut(s)	59, 213, 424, 503
NlaIV	GGNNCC	2 cut(s)	192, 594
NmuCI	GTSAC	2 cut(s)	12, 646
NsiI	ATGCAT	1 cut(s)	422
NspI	RCATGY	2 cut(s)	59, 424
PaqCI	CACCTGC	1 cut(s)	761
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PfeI	GAWTC	4 cut(s)	235, 249, 566, 720
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	2 cut(s)	65, 167
PpsI	GAGTC	2 cut(s)	65, 167
Ppu21I	YACGTR	1 cut(s)	823
Psp6I	CCWGG	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	2 cut(s)	192, 594
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	354, 594
RsaNI	GTAC	2 cut(s)	353, 593
RseI	CAYNNNNRTG	1 cut(s)	621
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	2 cut(s)	109, 552
SchI	GAGTC	2 cut(s)	65, 167
ScrFI	CCNGG	2 cut(s)	65, 543
SfaNI	GCATC	2 cut(s)	407, 470
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SnaBI	TACGTA	1 cut(s)	823
Sse9I	AATT	6 cut(s)	160, 196, 393, 433, 520, 761
SsiI	CCGC	1 cut(s)	201
StyD4I	CCNGG	2 cut(s)	63, 541
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	3 cut(s)	445, 808, 825
TaqI	TCGA	2 cut(s)	612, 696
TasI	AATT	6 cut(s)	160, 196, 393, 433, 520, 761
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	4 cut(s)	235, 249, 566, 720
TscAI	CASTG	1 cut(s)	371
TseFI	GTSAC	2 cut(s)	12, 646
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	2 cut(s)	12, 646
TspDTI	ATGAA	4 cut(s)	301, 342, 514, 674
TspRI	CASTG	1 cut(s)	371
Van91I	CCANNNNNTGG	1 cut(s)	398
XceI	RCATGY	2 cut(s)	59, 424
XmiI	GTMKAC	3 cut(s)	425, 819, 825
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.