Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

3511256 .. 3512159

Gene Structure 904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG051300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAAGACTCTATATTCCTCAAGGTACCAAATTGTGAGACATTATGGCCAATTGAAGTGAAAAAATCAGCTCATGGTGGCCGAATGTGGTTGCACAAGGGATGGCAAGAGTTTGCCAACTTTTACTCACTAGAGCAAGGATACTTGGTATTTGTGAGTTATAAAGGCGAGCATTCTCATTTCCAAGGACGCATTTTCCATTGGAATTATGTGGAAATCGAGTACCCTATTCGCGGATCAGGAGGAACTGATGGCATACCAAAAAGGAAAAGAACAAGAGCTCATGGTGGCATGCCTAATGCTTATTTAAAAGCAGCTAGAGCCATTTCAAATTCCTCCGGATCCTCGGGTAATGAACACCAGAATGTTCTTTCCACAGCTAACAGTTTCAAATCTGACAAGCCATTCATTATGATCAAAATGACAGCTTATTACTTGCGTAGAGAAATGTTTATAAGTGCATCTTTTGCCACAAAACATCTCTGTCGAGCAGGCGCTTCTTGTGACTTGTCCCTACAGACTCCAGATATGAGAACTTGGATTGCTGAATTGATTGTGTATGAAACCACTGAGTCAAGAGTATTTGCAAAGATTAAAGGTGCTGGTTGGAAAGCATTTAAGGAGGAAAATCATCTCGAAGAAGGTGATGTCTGTGTGCTTGAGTTGATAGAGGAATGTAAATTCAGAGTTTCATATTCCGAGCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

236

Amino Acids

27.01

Weight (kDa)

8.2

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	139 - 231	4.5e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	162, 455
Acc65I	GGTACC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	1 cut(s)	234
AccIII	TCCGGA	1 cut(s)	338
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	3 cut(s)	244, 336, 349
AcoI	YGGCCR	2 cut(s)	47, 79
AcsI	RAATTY	2 cut(s)	331, 680
AfaI	GTAC	2 cut(s)	27, 224
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	56, 330, 391
AluBI	AGCT	5 cut(s)	71, 281, 317, 380, 428
AluI	AGCT	5 cut(s)	71, 281, 317, 380, 428
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	3 cut(s)	244, 336, 349
Ama87I	CYCGRG	1 cut(s)	346
Aor13HI	TCCGGA	1 cut(s)	338
AoxI	GGCC	2 cut(s)	47, 79
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	2 cut(s)	331, 680
Asp718I	GGTACC	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	656
AvaI	CYCGRG	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	283
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	2 cut(s)	96, 245
BciVI	GTATCC	1 cut(s)	134
BclI	TGATCA	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	131, 318
BfmI	CTRYAG	1 cut(s)	515
BfoI	RGCGCY	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	134
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	27, 343
BmsI	GCATC	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	5, 680
BsaJI	CCNNGG	2 cut(s)	184, 345
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
BseAI	TCCGGA	1 cut(s)	338
BseDI	CCNNGG	2 cut(s)	184, 345
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	561
BseXI	GCAGC	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	49, 81
BshNI	GGYRCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	283
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	496
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	496
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	49, 81
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp13I	TCCGGA	1 cut(s)	338
Bsp143I	GATC	3 cut(s)	236, 341, 414
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	2 cut(s)	49, 81
BspCNI	CTCAG	1 cut(s)	562
BspEI	TCCGGA	1 cut(s)	338
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	27, 343
BspPI	GGATC	3 cut(s)	244, 336, 349
BspT107I	GGYRCC	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	184, 345
BssMI	GATC	3 cut(s)	236, 341, 414
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	1 cut(s)	386
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	170, 293, 493
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	3 cut(s)	239, 344, 417
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	3 cut(s)	236, 341, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 467
BstNSI	RCATGY	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	515
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuI	GTATCC	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	49, 81
BtsCI	GGATG	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	3 cut(s)	170, 293, 493
CfoI	GCGC	1 cut(s)	497
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	26, 223
CviAII	CATG	3 cut(s)	74, 284, 292
CviJI	RGCY	9 cut(s)	49, 71, 81, 281, 317, 323, 380, 403, 428
CviKI_1	RGCY	9 cut(s)	49, 71, 81, 281, 317, 323, 380, 403, 428
CviQI	GTAC	2 cut(s)	26, 223
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	3 cut(s)	238, 343, 416
DpnII	GATC	3 cut(s)	236, 341, 414
DraI	TTTAAA	1 cut(s)	309
EaeI	YGGCCR	2 cut(s)	47, 79
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	3 cut(s)	77, 287, 295
FalI	AAGNNNNNCTT	2 cut(s)	448, 480
FaqI	GGGAC	1 cut(s)	496
FatI	CATG	3 cut(s)	73, 283, 291
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	1 cut(s)	315
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	315
FspBI	CTAG	2 cut(s)	131, 318
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	1 cut(s)	315
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	49, 81
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	497
Hin1II	CATG	3 cut(s)	77, 287, 295
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HinfI	GANTC	3 cut(s)	8, 520, 572
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	656
Hpy188I	TCNGA	3 cut(s)	397, 686, 700
Hpy188III	TCNNGA	5 cut(s)	240, 339, 524, 576, 635
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4V	TGCA	3 cut(s)	94, 461, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 467
HpyF3I	CTNAG	1 cut(s)	570
Hsp92II	CATG	3 cut(s)	77, 287, 295
HspAI	GCGC	1 cut(s)	495
Kpn2I	TCCGGA	1 cut(s)	338
KpnI	GGTACC	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	3 cut(s)	236, 341, 414
LpnPI	CCDG	6 cut(s)	225, 352, 374, 477, 537, 588
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	1 cut(s)	470
MaeI	CTAG	2 cut(s)	131, 318
MaeIII	GTNAC	1 cut(s)	503
MalI	GATC	3 cut(s)	238, 343, 416
MboI	GATC	3 cut(s)	236, 341, 414
MboII	GAAGA	2 cut(s)	17, 650
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	1 cut(s)	341
MhlI	GDGCHC	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	49
MluCI	AATT	6 cut(s)	31, 51, 205, 331, 548, 680
MluNI	TGGCCA	1 cut(s)	49
MlyI	GAGTC	3 cut(s)	2, 514, 581
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	6 cut(s)	29, 236, 346, 355, 616, 664
Mox20I	TGGCCA	1 cut(s)	49
MroI	TCCGGA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	49
MseI	TTAA	3 cut(s)	308, 594, 618
MslI	CAYNNNNRTG	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	49
MspI	CCGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	172
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	320, 467
NdeII	GATC	3 cut(s)	236, 341, 414
NlaIII	CATG	3 cut(s)	77, 287, 295
NlaIV	GGNNCC	2 cut(s)	27, 343
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	1 cut(s)	295
PaeI	GCATGC	1 cut(s)	295
PctI	GAATGC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	316
PleI	GAGTC	3 cut(s)	2, 514, 580
PpsI	GAGTC	3 cut(s)	2, 514, 580
PsiI	TTATAA	2 cut(s)	162, 455
Psp124BI	GAGCTC	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	27, 343
PsuI	RGATCY	1 cut(s)	341
RsaI	GTAC	2 cut(s)	27, 224
RsaNI	GTAC	2 cut(s)	26, 223
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	283
SaqAI	TTAA	3 cut(s)	308, 594, 618
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	3 cut(s)	236, 341, 414
SchI	GAGTC	3 cut(s)	2, 514, 581
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	8 cut(s)	27, 73, 283, 319, 382, 430, 601, 646
SfaNI	GCATC	1 cut(s)	470
SfcI	CTRYAG	1 cut(s)	515
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	2 cut(s)	20, 659
SmoI	CTYRAG	2 cut(s)	20, 659
SphI	GCATGC	1 cut(s)	295
Sse9I	AATT	6 cut(s)	31, 51, 205, 331, 548, 680
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	131, 318
SstI	GAGCTC	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	1 cut(s)	386
TaqI	TCGA	3 cut(s)	219, 487, 636
TasI	AATT	6 cut(s)	31, 51, 205, 331, 548, 680
Tru1I	TTAA	3 cut(s)	308, 594, 618
Tru9I	TTAA	3 cut(s)	308, 594, 618
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	4 cut(s)	369, 397, 576, 681
TspRI	CASTG	1 cut(s)	574
XapI	RAATTY	2 cut(s)	331, 680
XceI	RCATGY	1 cut(s)	295
XspI	CTAG	2 cut(s)	131, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.