Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

67063425 .. 67065713

Gene Structure 2289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60506

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAAGATTGGACCTTTGAGATGGGGGAGAGGAGCCGAAATGGAAAACGACCCGCCGTTTGTGAGGAGTCTAAGGGGTTCTGCTTGAGGATTCAGAGTCGTGAGGATCTCAAAGATGGGAAGAAGGAACTTCCACCGGCAGCTGTGAGGAAGTATGGAGATCAAATGGCAGACCATATATTCCTGAAGGTTCCCAATTGTGGAAAACATTGGAAAATAGAATTGAGAACATCACCTCGTCGTGACCGGATGTGGTTAGAAAAGGGATGGGAAGAGTTTGCTAGCTTTTATTTACTGGACCAAGGCGACTTGGCAACCTTCAGCTCTGAAGATGAACATGCCCATTTCCAAATACGCATCTTTAGTTGGGACGATATGGAAATATATTACCCTATTCGTGGAGGAGGAGTTGATGTCAGCGGACCAAACAGGAAAGAAACAAGAGTTGAAGCTGAAGCTAGAGCCATTTCAATTTCCCCCAGATCCTCTGCTGATGAACACCAATATGATATTTCCAAAGTGAGCAGTTTCAGATCTGACAAGCCATGTCTTAATGTCCAAATCACAGCTACATCCTTAACCAATCGTGTGTTCATAAATCCAGAATTTGCGTTGGAACATTTCTGTAAAGAAGGCTCTTGTTGTGACTTGTCGTTACAGAATACTCTAGGTGACAGGATTTGGACGGTTCAGTGCATTTCTTACACAATAAGTGATGGAAGAATGCGAACAGTAATATCAGGAGCTGGTTGGAAATCCTTTAGGCAGGACAATCATCTAGAAGAGGGTGACGTCCTAGTGTTGGAGTTGATAGAGGAACGTAGGTGCAGAGTTTCGATAATCCGGGCTCAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

285

Amino Acids

32.89

Weight (kDa)

6.41

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	36 - 122	4.1e-10	B3 DNA binding domain
B3	PF02362	194 - 283	1.3e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	795
AciI	CCGC	2 cut(s)	54, 420
AclWI	GGATC	2 cut(s)	114, 477
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	4 cut(s)	206, 304, 348, 474
AcyI	GRCGYC	1 cut(s)	792
AfiI	CCNNNNNNNGG	3 cut(s)	200, 398, 802
AgsI	TTSAA	2 cut(s)	449, 471
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	7 cut(s)	143, 285, 324, 452, 458, 569, 746
AluI	AGCT	7 cut(s)	143, 285, 324, 452, 458, 569, 746
AlwI	GGATC	2 cut(s)	114, 477
AlwNI	CAGNNNCTG	1 cut(s)	746
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	605
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspS9I	GGNCC	3 cut(s)	12, 298, 422
AsuC2I	CCSGG	1 cut(s)	845
AsuHPI	GGTGA	3 cut(s)	225, 683, 800
AsuNHI	GCTAGC	1 cut(s)	281
AvaII	GGWCC	3 cut(s)	12, 298, 422
BanII	GRGCYC	1 cut(s)	850
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	4 cut(s)	16, 110, 261, 710
BceAI	ACGGC	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	845
BfaI	CTAG	5 cut(s)	282, 459, 668, 779, 797
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	3 cut(s)	12, 298, 422
BmgT120I	GGNCC	3 cut(s)	12, 298, 422
BmiI	GGNNCC	2 cut(s)	35, 192
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	1 cut(s)	366
BmtI	GCTAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	845
BsaHI	GRCGYC	1 cut(s)	792
BsaJI	CCNNGG	1 cut(s)	301
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	4 cut(s)	393, 399, 423, 429
Bsc4I	CCNNNNNNNGG	3 cut(s)	200, 398, 802
Bse118I	RCCGGY	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	3 cut(s)	255, 272, 572
BseLI	CCNNNNNNNGG	3 cut(s)	200, 398, 802
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	4 cut(s)	46, 80, 417, 420
BseXI	GCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	847
BsiSI	CCGG	3 cut(s)	137, 247, 844
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	200, 398, 802
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	729
Bsp1286I	GDGCHC	1 cut(s)	850
Bsp143I	GATC	4 cut(s)	106, 160, 482, 533
BspACI	CCGC	2 cut(s)	54, 420
BspLI	GGNNCC	2 cut(s)	35, 192
BspOI	GCTAGC	1 cut(s)	285
BspPI	GGATC	2 cut(s)	114, 477
BsrFI	RCCGGY	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	300
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	4 cut(s)	106, 160, 482, 533
BssNI	GRCGYC	1 cut(s)	792
BssT1I	CCWWGG	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	688, 733
Bst6I	CTCTTC	2 cut(s)	267, 777
BstACI	GRCGYC	1 cut(s)	792
BstC8I	GCNNGC	1 cut(s)	283
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	255, 272, 572
BstKTI	GATC	4 cut(s)	109, 163, 485, 536
BstMBI	GATC	4 cut(s)	106, 160, 482, 533
BstNSI	RCATGY	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	843
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	3 cut(s)	106, 482, 533
BstYI	RGATCY	3 cut(s)	106, 482, 533
BtsCI	GGATG	3 cut(s)	255, 272, 572
BtsIMutI	CAGTG	1 cut(s)	698
Cac8I	GCNNGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	746
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	12, 298, 422
CviAII	CATG	2 cut(s)	338, 546
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	4 cut(s)	108, 162, 484, 535
DpnII	GATC	4 cut(s)	106, 160, 482, 533
Eam1104I	CTCTTC	2 cut(s)	267, 777
EarI	CTCTTC	2 cut(s)	267, 777
Eco130I	CCWWGG	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	850
Eco47I	GGWCC	3 cut(s)	12, 298, 422
Eco57I	CTGAAG	4 cut(s)	206, 304, 348, 474
EcoT14I	CCWWGG	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	850
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	2 cut(s)	341, 549
FaiI	YATR	9 cut(s)	156, 177, 179, 339, 377, 385, 507, 547, 596
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	337, 545
FauI	CCCGC	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	3 cut(s)	262, 279, 559
FriOI	GRGCYC	1 cut(s)	850
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	5 cut(s)	282, 459, 668, 779, 797
GluI	GCNGC	1 cut(s)	141
HapII	CCGG	3 cut(s)	137, 247, 844
Hin1I	GRCGYC	1 cut(s)	792
Hin1II	CATG	2 cut(s)	341, 549
HinfI	GANTC	3 cut(s)	68, 91, 97
HpaII	CCGG	3 cut(s)	137, 247, 844
HphI	GGTGA	3 cut(s)	225, 683, 800
Hpy188I	TCNGA	4 cut(s)	96, 328, 533, 538
Hpy188III	TCNNGA	6 cut(s)	101, 184, 242, 602, 741, 779
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	4 cut(s)	118, 181, 328, 626
HpyCH4III	ACNGT	2 cut(s)	688, 733
HpyCH4IV	ACGT	2 cut(s)	792, 820
HpyCH4V	TGCA	2 cut(s)	696, 828
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	2 cut(s)	792, 820
Hsp92I	GRCGYC	1 cut(s)	792
Hsp92II	CATG	2 cut(s)	341, 549
Kzo9I	GATC	4 cut(s)	106, 160, 482, 533
LmnI	GCTCC	2 cut(s)	33, 743
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	5 cut(s)	282, 459, 668, 779, 797
MaeII	ACGT	2 cut(s)	792, 820
MaeIII	GTNAC	5 cut(s)	242, 644, 654, 671, 788
MalI	GATC	4 cut(s)	108, 162, 484, 535
MboI	GATC	4 cut(s)	106, 160, 482, 533
MboII	GAAGA	5 cut(s)	133, 284, 341, 732, 794
MfeI	CAATTG	1 cut(s)	196
MflI	RGATCY	3 cut(s)	106, 482, 533
MhlI	GDGCHC	1 cut(s)	850
MluCI	AATT	4 cut(s)	196, 221, 471, 605
MlyI	GAGTC	2 cut(s)	77, 106
MmeI	TCCRAC	3 cut(s)	594, 731, 783
MseI	TTAA	2 cut(s)	552, 578
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	2 cut(s)	143, 420
MspI	CCGG	3 cut(s)	137, 247, 844
MspR9I	CCNGG	1 cut(s)	845
MunI	CAATTG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	729
NciI	CCSGG	1 cut(s)	845
NdeII	GATC	4 cut(s)	106, 160, 482, 533
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	2 cut(s)	341, 549
NlaIV	GGNNCC	2 cut(s)	35, 192
NmuCI	GTSAC	4 cut(s)	242, 644, 671, 788
NspI	RCATGY	1 cut(s)	341
PctI	GAATGC	1 cut(s)	729
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	2 cut(s)	76, 105
PpsI	GAGTC	2 cut(s)	76, 105
PspN4I	GGNNCC	2 cut(s)	35, 192
PspPI	GGNCC	3 cut(s)	12, 298, 422
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	3 cut(s)	106, 482, 533
PvuII	CAGCTG	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	552, 578
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	4 cut(s)	106, 160, 482, 533
Sau96I	GGNCC	3 cut(s)	12, 298, 422
SchI	GAGTC	2 cut(s)	77, 106
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	1 cut(s)	850
SfaNI	GCATC	1 cut(s)	366
SinI	GGWCC	3 cut(s)	12, 298, 422
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	4 cut(s)	196, 221, 471, 605
SsiI	CCGC	2 cut(s)	54, 420
SspMI	CTAG	5 cut(s)	282, 459, 668, 779, 797
StyD4I	CCNGG	1 cut(s)	843
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	688, 733
TaiI	ACGT	2 cut(s)	795, 823
TaqI	TCGA	1 cut(s)	836
TasI	AATT	4 cut(s)	196, 221, 471, 605
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	552, 578
Tru9I	TTAA	2 cut(s)	552, 578
TscAI	CASTG	1 cut(s)	698
TseFI	GTSAC	4 cut(s)	242, 644, 671, 788
TseI	GCWGC	1 cut(s)	140
Tsp45I	GTSAC	4 cut(s)	242, 644, 671, 788
TspDTI	ATGAA	4 cut(s)	17, 348, 510, 583
TspRI	CASTG	1 cut(s)	698
VpaK11BI	GGWCC	3 cut(s)	12, 298, 422
XapI	RAATTY	1 cut(s)	605
XbaI	TCTAGA	1 cut(s)	778
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	5 cut(s)	282, 459, 668, 779, 797
ZraI	GACGTC	1 cut(s)	793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.