Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

65183959 .. 65187339

Gene Structure 3381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTGTAAAGATATATCGAAACTGTATGGAAGACTCTATATTCCTCAAGGTACCAAATTGTGAGACATTATGGCCAATTGAAGTGAAAAAATCAGCTCGTGGTGGCCGAATGTGGTTGCACAAGGGATGGCAAGAGTTTGCCAACTTTTACTCACTAGAGCAAGGATACTTGGTATTTGTGAGTTATAAAGGCGAGCATTCTCATTTCCAAGGGCGCATTTTCCATTGGAATGATGTGGAAATCGTGTACCCTATTCGCAGATCAGGAGGAGTGCCAAAAAGGAAAAGAACAGGAGCTAATCGAAACACCCCTCGCGCCTATTTAGAGGCTAGAACCAGTCCAACTTCCTCTGGATCCTCGACTGATGAAAACCAAAATGATCTTTCCACAGCTACTAGTTTCAAATCTGACAAGCCACTTCTTATGCTCAGAATGACAGCTACATATATACGCTGCTCTGGCGCGTATATTAGTCCATCTTTTGCCAAGGAACATGTCTGCAGACCAGGCACTTCATGCAATGTGACCCTACAAATTTCAAAGGAGAAAGTTTGGACTGCTCAATGCACTGTTGGTGAAAACAGTGAGCACAAACTATATGCAAGAGTTTCAGGTGCTGGTTGGAAAGCATTTAAGGAGGACAATCATCTGGAAGTACATGATGTCTGTGTGTTTGAGTTGATTGAGGAGCGTACATTCAAAGTTTCCATAATCCGAGCTAAAGTGAAGATCAATAAGCAAGATGAGGAAAGTGAAGACAAGCTCATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

259

Amino Acids

29.6

Weight (kDa)

9.08

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	147 - 241	9.1e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
Acc65I	GGTACC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	52
AccII	CGCG	2 cut(s)	318, 467
AclWI	GGATC	2 cut(s)	351, 364
AcoI	YGGCCR	2 cut(s)	74, 106
AcsI	RAATTY	1 cut(s)	537
AfaI	GTAC	4 cut(s)	54, 251, 660, 697
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	4 cut(s)	83, 406, 543, 703
AhlI	ACTAGT	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	6 cut(s)	98, 299, 395, 443, 722, 766
AluI	AGCT	6 cut(s)	98, 299, 395, 443, 722, 766
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	2 cut(s)	351, 364
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	2 cut(s)	74, 106
ApeKI	GCWGC	1 cut(s)	456
ApoI	RAATTY	1 cut(s)	537
Asp718I	GGTACC	1 cut(s)	52
AspLEI	GCGC	3 cut(s)	219, 320, 467
AsuHPI	GGTGA	1 cut(s)	590
BalI	TGGCCA	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	2 cut(s)	39, 765
Bbv12I	GWGCWC	1 cut(s)	594
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	2 cut(s)	123, 487
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	59
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	3 cut(s)	158, 333, 399
BfmI	CTRYAG	1 cut(s)	502
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	457
BlsI	GCNGC	1 cut(s)	458
Bme1390I	CCNGG	1 cut(s)	510
BmiI	GGNNCC	2 cut(s)	54, 358
BmrFI	CCNGG	1 cut(s)	510
BpiI	GAAGAC	2 cut(s)	39, 765
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	211, 489
Bse1I	ACTGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	211, 489
BseGI	GGATG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	445
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	2 cut(s)	285, 704
BseXI	GCAGC	1 cut(s)	443
Bsh1236I	CGCG	2 cut(s)	318, 467
BshFI	GGCC	2 cut(s)	76, 108
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	594
BsmAI	GTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	76, 108
Bsp1286I	GDGCHC	1 cut(s)	594
Bsp143I	GATC	4 cut(s)	263, 356, 382, 732
BspANI	GGCC	2 cut(s)	76, 108
BspCNI	CTCAG	1 cut(s)	444
BspFNI	CGCG	2 cut(s)	318, 467
BspLI	GGNNCC	2 cut(s)	54, 358
BspMAI	CTGCAG	1 cut(s)	506
BspPI	GGATC	2 cut(s)	351, 364
BspT107I	GGYRCC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	2 cut(s)	211, 489
BssMI	GATC	4 cut(s)	263, 356, 382, 732
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	2 cut(s)	211, 489
Bst2BI	CACGAG	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	26, 574, 587
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	134
BstFNI	CGCG	2 cut(s)	318, 467
BstHHI	GCGC	3 cut(s)	219, 320, 467
BstKTI	GATC	4 cut(s)	266, 359, 385, 735
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	4 cut(s)	263, 356, 382, 732
BstMWI	GCNNNNNNNGC	3 cut(s)	462, 510, 519
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	502
BstUI	CGCG	2 cut(s)	318, 467
BstV1I	GCAGC	1 cut(s)	443
BstV2I	GAAGAC	2 cut(s)	39, 765
BstX2I	RGATCY	1 cut(s)	356
BstYI	RGATCY	1 cut(s)	356
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	76, 108
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	570, 592
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	3 cut(s)	219, 320, 467
Csp6I	GTAC	4 cut(s)	53, 250, 659, 696
CviAII	CATG	4 cut(s)	497, 519, 662, 769
CviQI	GTAC	4 cut(s)	53, 250, 659, 696
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	4 cut(s)	265, 358, 384, 734
DpnII	GATC	4 cut(s)	263, 356, 382, 732
EaeI	YGGCCR	2 cut(s)	74, 106
Eco130I	CCWWGG	2 cut(s)	211, 489
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	2 cut(s)	211, 489
ErhI	CCWWGG	2 cut(s)	211, 489
FaeI	CATG	4 cut(s)	500, 522, 665, 772
FatI	CATG	4 cut(s)	496, 518, 661, 768
Fnu4HI	GCNGC	1 cut(s)	457
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	457
FspBI	CTAG	3 cut(s)	158, 333, 399
GlaI	GCGC	3 cut(s)	218, 319, 466
GluI	GCNGC	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	76, 108
HhaI	GCGC	3 cut(s)	219, 320, 467
Hin1II	CATG	4 cut(s)	500, 522, 665, 772
Hin6I	GCGC	3 cut(s)	217, 318, 465
HinP1I	GCGC	3 cut(s)	217, 318, 465
HinfI	GANTC	1 cut(s)	35
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	3 cut(s)	412, 434, 719
Hpy188III	TCNNGA	3 cut(s)	267, 354, 653
Hpy8I	GTNNAC	1 cut(s)	250
HpyCH4III	ACNGT	3 cut(s)	26, 574, 587
HpyCH4V	TGCA	5 cut(s)	121, 504, 522, 570, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	462, 510, 519
HpyF3I	CTNAG	1 cut(s)	431
Hsp92II	CATG	4 cut(s)	500, 522, 665, 772
HspAI	GCGC	3 cut(s)	217, 318, 465
KpnI	GGTACC	1 cut(s)	56
Kzo9I	GATC	4 cut(s)	263, 356, 382, 732
LmnI	GCTCC	2 cut(s)	296, 691
Lsp1109I	GCAGC	1 cut(s)	443
MaeI	CTAG	3 cut(s)	158, 333, 399
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	4 cut(s)	265, 358, 384, 734
MboI	GATC	4 cut(s)	263, 356, 382, 732
MboII	GAAGA	3 cut(s)	44, 742, 770
MfeI	CAATTG	1 cut(s)	78
MflI	RGATCY	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	594
MlsI	TGGCCA	1 cut(s)	76
MluCI	AATT	3 cut(s)	58, 78, 537
MluNI	TGGCCA	1 cut(s)	76
MlyI	GAGTC	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	368, 605
MnlI	CCTC	9 cut(s)	56, 263, 322, 324, 361, 370, 634, 682, 742
Mox20I	TGGCCA	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	76
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	231
Msp20I	TGGCCA	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	2 cut(s)	318, 467
MwoI	GCNNNNNNNGC	3 cut(s)	462, 510, 519
NdeII	GATC	4 cut(s)	263, 356, 382, 732
NlaIII	CATG	4 cut(s)	500, 522, 665, 772
NlaIV	GGNNCC	2 cut(s)	54, 358
NmuCI	GTSAC	1 cut(s)	526
NspI	RCATGY	1 cut(s)	500
PciI	ACATGT	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PctI	GAATGC	1 cut(s)	199
PkrI	GCNGC	1 cut(s)	458
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PscI	ACATGT	1 cut(s)	496
PsiI	TTATAA	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	54, 358
PstI	CTGCAG	1 cut(s)	506
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	356
RsaI	GTAC	4 cut(s)	54, 251, 660, 697
RsaNI	GTAC	4 cut(s)	53, 250, 659, 696
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	1 cut(s)	457
Sau3AI	GATC	4 cut(s)	263, 356, 382, 732
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	510
SduI	GDGCHC	1 cut(s)	594
SetI	ASST	8 cut(s)	54, 100, 301, 397, 445, 619, 724, 768
SfcI	CTRYAG	1 cut(s)	502
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	3 cut(s)	58, 78, 537
SspMI	CTAG	3 cut(s)	158, 333, 399
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	2 cut(s)	211, 489
TaaI	ACNGT	3 cut(s)	26, 574, 587
TaqI	TCGA	3 cut(s)	19, 304, 362
TasI	AATT	3 cut(s)	58, 78, 537
TatI	WGTACW	1 cut(s)	658
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	2 cut(s)	577, 592
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	1 cut(s)	456
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	2 cut(s)	384, 507
TspRI	CASTG	2 cut(s)	577, 592
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	500
XspI	CTAG	3 cut(s)	158, 333, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.