Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006047.1

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

74310 .. 74924

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006047.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgggaattgattcaacacgaactgatggcataccaaaaaggaaaagaacaagagctcatggtggcatgcctaatgcttatttaaaagcagctagagccatttcaaattcctccggatcctcgggtaatgaacacctgaatgttctttccacagctaacagtttcaaatctgacaagccattcattatgatcaaaatgacagcttattacttgcgtagagaaatgtttataagtgcatcttttgccacaaaacatctctgtcgagcaggcgcttcttgtgacttgtccctacagactccagatatgagaacttggattgctgaattgattgtgtatgaaaccactgagtcaagagtatttgcaaagattaaaggtgctggttggaaagcatttaaggaggaaaatcatctcgaagaaggtgatgtctgtgtgcttgagttgatagaggaatgtaaattcagagtttcgatattccgagcaagagtgaagattaacgagttaagtgaagctggaaggccaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

174

Amino Acids

19.54

Weight (kDa)

9.48

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	113
AclWI	GGATC	2 cut(s)	111, 124
AcsI	RAATTY	2 cut(s)	106, 455
AgsI	TTSAA	3 cut(s)	15, 105, 166
AluBI	AGCT	5 cut(s)	56, 92, 155, 203, 509
AluI	AGCT	5 cut(s)	56, 92, 155, 203, 509
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	2 cut(s)	111, 124
Ama87I	CYCGRG	1 cut(s)	121
Aor13HI	TCCGGA	1 cut(s)	113
AoxI	GGCC	1 cut(s)	515
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	2 cut(s)	106, 455
Asp700I	GAANNNNTTC	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	121
BamHI	GGATCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	20
BclI	TGATCA	1 cut(s)	189
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	113
BseAI	TCCGGA	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	101
BshFI	GGCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	517
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp13I	TCCGGA	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	116, 189
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	1 cut(s)	337
BspEI	TCCGGA	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	111, 124
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	116, 189
Bst4CI	ACNGT	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	68, 268
BstDEI	CTNAG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	2 cut(s)	119, 192
BstMBI	GATC	2 cut(s)	116, 189
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 242
BstNSI	RCATGY	1 cut(s)	70
BstSFI	CTRYAG	1 cut(s)	290
BstV1I	GCAGC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	517
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	68, 268
CfoI	GCGC	1 cut(s)	272
CviAII	CATG	2 cut(s)	59, 67
CviJI	RGCY	8 cut(s)	56, 92, 98, 155, 178, 203, 509, 517
CviKI_1	RGCY	8 cut(s)	56, 92, 98, 155, 178, 203, 509, 517
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	2 cut(s)	118, 191
DpnII	GATC	2 cut(s)	116, 189
DraI	TTTAAA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	56
Eco24I	GRGCYC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	56
Eco88I	CYCGRG	1 cut(s)	121
EcoICRI	GAGCTC	1 cut(s)	56
EcoT38I	GRGCYC	1 cut(s)	58
FaeI	CATG	2 cut(s)	62, 70
FaiI	YATR	7 cut(s)	32, 60, 68, 188, 230, 305, 336
FalI	AAGNNNNNCTT	2 cut(s)	223, 255
FaqI	GGGAC	1 cut(s)	271
FatI	CATG	2 cut(s)	58, 66
FbaI	TGATCA	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	90
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	62, 70
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	3 cut(s)	11, 295, 347
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	431
Hpy188I	TCNGA	3 cut(s)	172, 461, 476
Hpy188III	TCNNGA	4 cut(s)	114, 299, 351, 410
HpyAV	CCTTC	2 cut(s)	410, 507
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	236, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 242
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	62, 70
HspAI	GCGC	1 cut(s)	270
Kpn2I	TCCGGA	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	116, 189
LpnPI	CCDG	6 cut(s)	127, 149, 252, 312, 363, 495
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	118, 191
MboI	GATC	2 cut(s)	116, 189
MboII	GAAGA	2 cut(s)	425, 499
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	4 cut(s)	6, 106, 323, 455
MlyI	GAGTC	2 cut(s)	289, 356
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	4 cut(s)	121, 130, 391, 439
MroI	TCCGGA	1 cut(s)	113
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	5 cut(s)	83, 369, 393, 492, 500
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	95, 242
NdeII	GATC	2 cut(s)	116, 189
NlaIII	CATG	2 cut(s)	62, 70
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	70
PaeI	GCATGC	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	2 cut(s)	289, 355
PpsI	GAGTC	2 cut(s)	289, 355
PsiI	TTATAA	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	58
SaqAI	TTAA	5 cut(s)	83, 369, 393, 492, 500
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	116, 189
SchI	GAGTC	2 cut(s)	289, 356
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	8 cut(s)	58, 94, 138, 157, 205, 376, 421, 511
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
SphI	GCATGC	1 cut(s)	70
Sse9I	AATT	4 cut(s)	6, 106, 323, 455
SspMI	CTAG	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	3 cut(s)	262, 411, 467
TasI	AATT	4 cut(s)	6, 106, 323, 455
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	5 cut(s)	83, 369, 393, 492, 500
Tru9I	TTAA	5 cut(s)	83, 369, 393, 492, 500
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	144, 172, 351
TspRI	CASTG	1 cut(s)	349
XapI	RAATTY	2 cut(s)	106, 455
XceI	RCATGY	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.