Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Forward (+)

31632195 .. 31633631

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGAGTGCAACGAGTTTCAACGGTTGGTTGAGGAGGCAAACAAACCGTTGTACCCCGGTTGTAAGTTGCACACCAAGTTCAATGCACTTCTATGAACTTTTGTATGCTTTTTTCTTGTTTAGGAGTTTAAGTGGGCTTCTTTTGCCGTTGGCAATTGGTGAAGGCGAAAATTGCATTCCAATTGTTCGACGAAATGTTTATGAGGAACTAAAATTTTCACTTATAGTTGCATTTCTTGAGGAACTTCCGCCAGCAGTTGTGAGGGAGTATGGACATCAAATGGCAAACCATATATTTCTTAATGTTCCAAATTGTGGAGAACATTGGAGAATAGAATTGAGAACACCACCTCGTGGTGACCGGATGTGGTTGGAGAAGGGATGGGAAGAGTTTGACAGCTTTTACTTACTGGACCAAGGCGACATGGCAACCTTCAGCTTTGAAGGCGAACATTCCCATTTCCATATAAGCATCTATAGTTGGGATGATATGGAAATAAAATACCTTATTCTTAGCAGAGGAGCTGATGCCAGTCCACCAGAAAGAAAAGAAATAGGAACAGAAGCTTGGGTTGTAGCCATTTCCAGTTCTCCTAGATCCCTTGCTGTTGTACACGTATGTGGAAAAGATAGGGTAAGAAGACGAATGAGACAAACAGGATTTGAAGCTGAAGCTAGAGCCATTTCAGTTTCTCCCAGATGCTTAGCTGATGAACACGAATATGATCCTTCCCAAATGAGCAGTTTCAGGTCGGACAAGCCATTTCTTGATATCAGAATTCCAGCCAAAACCTTATCCTTTCATGTGGTAAGCTTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

274

Amino Acids

31.38

Weight (kDa)

6.07

Isoelectric Point (pI)

61.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	82 - 159	4.2e-07	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	314, 353
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	2 cut(s)	591, 719
AcsI	RAATTY	2 cut(s)	212, 777
AcuI	CTGAAG	2 cut(s)	418, 690
AdeI	CACNNNGTG	1 cut(s)	353
AfaI	GTAC	2 cut(s)	52, 612
AfiI	CCNNNNNNNGG	2 cut(s)	314, 353
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	4 cut(s)	19, 81, 443, 665
AjuI	GAANNNNNNNTTGG	2 cut(s)	550, 582
AleI	CACNNNNGTG	1 cut(s)	618
AluBI	AGCT	8 cut(s)	399, 438, 524, 566, 668, 674, 707, 813
AluI	AGCT	8 cut(s)	399, 438, 524, 566, 668, 674, 707, 813
Alw26I	GTCTC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	591, 719
ApoI	RAATTY	2 cut(s)	212, 777
AspS9I	GGNCC	1 cut(s)	412
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	2 cut(s)	170, 368
AvaII	GGWCC	1 cut(s)	412
BaeI	ACNNNNGTAYC	2 cut(s)	34, 67
BauI	CACGAG	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	646
BccI	CCATC	1 cut(s)	375
BceAI	ACGGC	1 cut(s)	130
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	2 cut(s)	594, 675
BfmI	CTRYAG	1 cut(s)	475
BlpI	GCTNAGC	1 cut(s)	703
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	3 cut(s)	480, 517, 689
BpiI	GAAGAC	1 cut(s)	646
Bpu1102I	GCTNAGC	1 cut(s)	703
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	616
BsaJI	CCNNGG	2 cut(s)	54, 415
BsaWI	WCCGGW	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 353
Bse1I	ACTGG	3 cut(s)	414, 531, 585
BseDI	CCNNGG	2 cut(s)	54, 415
BseGI	GGATG	3 cut(s)	369, 386, 490
BseLI	CCNNNNNNNGG	2 cut(s)	314, 353
BseNI	ACTGG	3 cut(s)	414, 531, 585
BseRI	GAGGAG	2 cut(s)	46, 534
BsiSI	CCGG	2 cut(s)	56, 361
BslI	CCNNNNNNNGG	2 cut(s)	314, 353
BsmAI	GTCTC	1 cut(s)	643
BsmI	GAATGC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	2 cut(s)	596, 724
Bsp1720I	GCTNAGC	1 cut(s)	703
BspACI	CCGC	1 cut(s)	248
BspPI	GGATC	2 cut(s)	591, 719
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	3 cut(s)	414, 531, 585
BssECI	CCNNGG	2 cut(s)	54, 415
BssMI	GATC	2 cut(s)	596, 724
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	415
Bst2BI	CACGAG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	23, 47
Bst6I	CTCTTC	1 cut(s)	381
BstAUI	TGTACA	1 cut(s)	610
BstBAI	YACGTR	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	512, 703
BstEII	GGTNACC	1 cut(s)	356
BstF5I	GGATG	3 cut(s)	369, 386, 490
BstKTI	GATC	2 cut(s)	599, 727
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	2 cut(s)	596, 724
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 171, 444
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BtsCI	GGATG	3 cut(s)	369, 386, 490
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	51, 611
CviAII	CATG	2 cut(s)	424, 803
CviQI	GTAC	2 cut(s)	51, 611
DdeI	CTNAG	2 cut(s)	512, 703
DpnI	GATC	2 cut(s)	598, 726
DpnII	GATC	2 cut(s)	596, 724
DraIII	CACNNNGTG	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
EciI	GGCGGA	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	772
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	2 cut(s)	418, 690
Eco91I	GGTNACC	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	777
EcoRV	GATATC	1 cut(s)	772
EcoT14I	CCWWGG	1 cut(s)	415
ErhI	CCWWGG	1 cut(s)	415
FaeI	CATG	2 cut(s)	427, 806
FalI	AAGNNNNNCTT	1 cut(s)	802
FatI	CATG	2 cut(s)	423, 802
FokI	GGATG	3 cut(s)	376, 393, 497
FspBI	CTAG	2 cut(s)	594, 675
HapII	CCGG	2 cut(s)	56, 361
Hin1II	CATG	2 cut(s)	427, 806
HindIII	AAGCTT	2 cut(s)	564, 811
HpaII	CCGG	2 cut(s)	56, 361
HphI	GGTGA	2 cut(s)	170, 368
Hpy166II	GTNNAC	2 cut(s)	536, 613
Hpy188I	TCNGA	2 cut(s)	754, 776
Hpy188III	TCNNGA	2 cut(s)	236, 767
Hpy8I	GTNNAC	2 cut(s)	536, 613
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	5 cut(s)	155, 370, 437, 442, 738
HpyCH4III	ACNGT	2 cut(s)	23, 47
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	5 cut(s)	8, 69, 85, 174, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 171, 444
HpyF3I	CTNAG	2 cut(s)	512, 703
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	2 cut(s)	427, 806
Kzo9I	GATC	2 cut(s)	596, 724
LmnI	GCTCC	1 cut(s)	521
LweI	GCATC	3 cut(s)	480, 517, 689
MaeI	CTAG	2 cut(s)	594, 675
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	2 cut(s)	598, 726
MboI	GATC	2 cut(s)	596, 724
MboII	GAAGA	2 cut(s)	398, 651
MfeI	CAATTG	2 cut(s)	153, 180
MflI	RGATCY	1 cut(s)	596
MluCI	AATT	7 cut(s)	153, 169, 180, 212, 310, 335, 777
MmeI	TCCRAC	2 cut(s)	351, 732
MnlI	CCTC	7 cut(s)	24, 27, 196, 232, 255, 360, 512
MseI	TTAA	3 cut(s)	128, 300, 820
MslI	CAYNNNNRTG	3 cut(s)	90, 618, 720
MspI	CCGG	2 cut(s)	56, 361
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	2 cut(s)	153, 180
Mva1269I	GAATGC	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	142, 171, 444
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	2 cut(s)	596, 724
NlaIII	CATG	2 cut(s)	427, 806
NmuCI	GTSAC	1 cut(s)	356
OliI	CACNNNNGTG	1 cut(s)	618
PctI	GAATGC	1 cut(s)	174
PflMI	CCANNNNNTGG	2 cut(s)	314, 353
Ppu21I	YACGTR	1 cut(s)	616
PspEI	GGTNACC	1 cut(s)	356
PspPI	GGNCC	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	2 cut(s)	52, 612
RsaNI	GTAC	2 cut(s)	51, 611
RseI	CAYNNNNRTG	3 cut(s)	90, 618, 720
SaqAI	TTAA	3 cut(s)	128, 300, 820
Sau3AI	GATC	2 cut(s)	596, 724
Sau96I	GGNCC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	56
SfaNI	GCATC	3 cut(s)	480, 517, 689
SfcI	CTRYAG	1 cut(s)	475
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	3 cut(s)	90, 618, 720
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	7 cut(s)	153, 169, 180, 212, 310, 335, 777
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	2 cut(s)	594, 675
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	23, 47
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	1 cut(s)	187
TasI	AATT	7 cut(s)	153, 169, 180, 212, 310, 335, 777
TatI	WGTACW	1 cut(s)	610
Tru1I	TTAA	3 cut(s)	128, 300, 820
Tru9I	TTAA	3 cut(s)	128, 300, 820
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	3 cut(s)	108, 726, 791
Van91I	CCANNNNNTGG	2 cut(s)	314, 353
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	2 cut(s)	212, 777
XspI	CTAG	2 cut(s)	594, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.