Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

1145032 .. 1146989

Gene Structure 1958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026193

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTTCTTCCGGCTCCCTTGCTGGAAAGGGAAAACGACATGCCGTGCAGGAGAACTCTCCAGCCTTCTGCTTGAGGATTTTCAGTCGTGAAGATCTCAAAGACGGGAAGAAGGAACTTCCGCCGGCAGCTGTGAGGGACTCTGAAGGCGAAAATTCCCATTTCCAAGTAAGCATCTATAGTTGGGATGATATGGAAATAGAATACCCTATTCGCATTGGAGCAGCTGATGTCAGCACACCAGATAGAAAAGAAATAGGAGCTGAAGCTCTAGCTATAGCCATTTCGGTTTCCCCCAGATCCTCTGCTGATGAACGTGGAAGTGCTAAGGTCAGAAGACGAAGAAGGAAAGTAACAGGATCTGAAGCTGAAGCTAGAGCCAATTCAATTTCCCCAAGATCATCTGCTGATGAACACGAATATGATGTGAGCAGTTTCAGGTCGGACAAGCCATTTCTTGATATCAGAATTCCAGCCAAAACCTTGGCCTTCCGTGTGTTTATAAATCAAGCTTTTGCCTCAGAACATTTCTATAAAGCAGACACTTGTTGTGACTTGACGCTACAGAATAATCAAGGTGACAAAGTTTGGACAATTCAGTGTTGTTCATACAAAAGAAGTAACGGAAGAATACAAGCAATAATTTCAGGTGCTGGTTGGAAAGCATTTAGGCAGGACAATCACCTGGAAGAAGGTGATGTCTGTGTCCTAGAGGTGATAGAGGAACGTAAGTGCAGAGTTTCGATATTCCGAGCTAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

255

Amino Acids

28.39

Weight (kDa)

8.64

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	164 - 252	9.5e-14	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	2 cut(s)	294, 367
AcsI	RAATTY	2 cut(s)	154, 468
AcuI	CTGAAG	4 cut(s)	165, 285, 384, 390
AgsI	TTSAA	1 cut(s)	387
AjnI	CCWGG	1 cut(s)	684
AluBI	AGCT	9 cut(s)	131, 227, 263, 269, 275, 368, 374, 512, 755
AluI	AGCT	9 cut(s)	131, 227, 263, 269, 275, 368, 374, 512, 755
AlwI	GGATC	2 cut(s)	294, 367
AlwNI	CAGNNNCTG	2 cut(s)	362, 653
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	2 cut(s)	128, 224
ApoI	RAATTY	2 cut(s)	154, 468
AsuHPI	GGTGA	4 cut(s)	590, 674, 707, 727
BbsI	GAAGAC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	140, 236
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	686
BfaI	CTAG	3 cut(s)	272, 375, 710
BfmI	CTRYAG	3 cut(s)	178, 276, 563
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	2 cut(s)	129, 225
BlsI	GCNGC	2 cut(s)	130, 226
Bme1390I	CCNGG	1 cut(s)	686
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	686
BmsI	GCATC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	343
BpmI	CTGGAG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	483
Bse118I	RCCGGY	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	686
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	534
BseXI	GCAGC	2 cut(s)	140, 236
BsgI	GTGCAG	2 cut(s)	68, 754
BshFI	GGCC	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	12, 125
BslFI	GGGAC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	488
Bsp143I	GATC	4 cut(s)	94, 299, 359, 398
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	294, 367
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	4 cut(s)	94, 299, 359, 398
BssT1I	CCWWGG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	686
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	327, 520
BstF5I	GGATG	1 cut(s)	193
BstKTI	GATC	4 cut(s)	97, 302, 362, 401
BstMBI	GATC	4 cut(s)	94, 299, 359, 398
BstNI	CCWGG	1 cut(s)	686
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	684
BstSFI	CTRYAG	3 cut(s)	178, 276, 563
BstV1I	GCAGC	2 cut(s)	140, 236
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	3 cut(s)	94, 299, 359
BstXI	CCANNNNNNTGG	1 cut(s)	484
BstYI	RGATCY	3 cut(s)	94, 299, 359
BsuRI	GGCC	1 cut(s)	488
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	605
Cac8I	GCNNGC	1 cut(s)	126
CaiI	CAGNNNCTG	2 cut(s)	362, 653
Cfr10I	RCCGGY	1 cut(s)	124
CseI	GACGC	1 cut(s)	568
CviAII	CATG	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	327, 520
DpnI	GATC	4 cut(s)	96, 301, 361, 400
DpnII	GATC	4 cut(s)	94, 299, 359, 398
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	483
Eco32I	GATATC	1 cut(s)	463
Eco57I	CTGAAG	4 cut(s)	165, 285, 384, 390
EcoRI	GAATTC	1 cut(s)	468
EcoRII	CCWGG	1 cut(s)	684
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	483
FaeI	CATG	1 cut(s)	44
FaiI	YATR	8 cut(s)	42, 180, 194, 278, 423, 503, 534, 610
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	40
Fnu4HI	GCNGC	2 cut(s)	129, 225
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	2 cut(s)	129, 225
FspBI	CTAG	3 cut(s)	272, 375, 710
GluI	GCNGC	2 cut(s)	129, 225
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	2 cut(s)	12, 125
HgaI	GACGC	1 cut(s)	568
Hin1II	CATG	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	510
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	2 cut(s)	12, 125
HphI	GGTGA	4 cut(s)	590, 674, 707, 727
Hpy188I	TCNGA	7 cut(s)	145, 335, 364, 445, 467, 523, 752
Hpy188III	TCNNGA	2 cut(s)	89, 458
HpyAV	CCTTC	6 cut(s)	76, 106, 140, 339, 499, 686
HpyCH4IV	ACGT	2 cut(s)	316, 727
HpyCH4V	TGCA	2 cut(s)	49, 735
HpyF3I	CTNAG	2 cut(s)	327, 520
HpySE526I	ACGT	2 cut(s)	316, 727
Hsp92II	CATG	1 cut(s)	44
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	94, 299, 359, 398
LmnI	GCTCC	3 cut(s)	20, 221, 260
Lsp1109I	GCAGC	2 cut(s)	140, 236
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	3 cut(s)	272, 375, 710
MaeII	ACGT	2 cut(s)	316, 727
MaeIII	GTNAC	4 cut(s)	352, 551, 578, 620
MalI	GATC	4 cut(s)	96, 301, 361, 400
MboI	GATC	4 cut(s)	94, 299, 359, 398
MboII	GAAGA	6 cut(s)	104, 121, 348, 354, 639, 701
MflI	RGATCY	3 cut(s)	94, 299, 359
MluCI	AATT	6 cut(s)	154, 382, 387, 468, 594, 642
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	423, 638
MnlI	CCTC	6 cut(s)	69, 129, 313, 529, 706, 715
MroNI	GCCGGC	1 cut(s)	124
MslI	CAYNNNNRTG	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	131, 227
MspI	CCGG	2 cut(s)	12, 125
MspR9I	CCNGG	1 cut(s)	686
MvaI	CCWGG	1 cut(s)	686
NaeI	GCCGGC	1 cut(s)	126
NdeII	GATC	4 cut(s)	94, 299, 359, 398
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	44
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	2 cut(s)	551, 578
NspI	RCATGY	1 cut(s)	44
PdiI	GCCGGC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	130, 226
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PsiI	TTATAA	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	684
PspGI	CCWGG	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	16
PstNI	CAGNNNCTG	2 cut(s)	362, 653
PsuI	RGATCY	3 cut(s)	94, 299, 359
PvuII	CAGCTG	2 cut(s)	131, 227
RseI	CAYNNNNRTG	1 cut(s)	420
SatI	GCNGC	2 cut(s)	129, 225
Sau3AI	GATC	4 cut(s)	94, 299, 359, 398
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	686
SfaNI	GCATC	1 cut(s)	183
SfcI	CTRYAG	3 cut(s)	178, 276, 563
SmiMI	CAYNNNNRTG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	6 cut(s)	154, 382, 387, 468, 594, 642
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	3 cut(s)	272, 375, 710
StyD4I	CCNGG	1 cut(s)	684
StyI	CCWWGG	1 cut(s)	483
TaiI	ACGT	2 cut(s)	319, 730
TaqI	TCGA	1 cut(s)	743
TasI	AATT	6 cut(s)	154, 382, 387, 468, 594, 642
TscAI	CASTG	1 cut(s)	605
TseFI	GTSAC	2 cut(s)	551, 578
TseI	GCWGC	2 cut(s)	128, 224
Tsp45I	GTSAC	2 cut(s)	551, 578
TspDTI	ATGAA	3 cut(s)	327, 426, 597
TspGWI	ACGGA	2 cut(s)	482, 639
TspRI	CASTG	1 cut(s)	605
XapI	RAATTY	2 cut(s)	154, 468
XceI	RCATGY	1 cut(s)	44
XspI	CTAG	3 cut(s)	272, 375, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.