Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

1452645 .. 1454553

Gene Structure 1909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G001780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCCACAATGTCACGCCCAATGGCTTCTCGGAGCAAGAGAGAGGGAAGAGGACATGCCTTCCCGGTGGACTCTCCAAGCTTCTGCTTGAAGATTGTTACTGCTGTGGATCTCCAAGATGGGAAGGAACTTCCGGAGCCAGCTGTGAGGAAGTATGGGAATTGTATGGCAGACACCATATTCCTCAAGGTTCCCAATTGCGGAACATCATGGCCAGTAGAACTGAAAAAAACGATTCGTGGTAGCCGAATCTGGTTACAAAAAGGATGGGAACAGTTCACAGACTTTTACTCCATAGACCAAGATTACTTCATAGTGTTCAGTTATGAAGGCGAACATTCTCATTTCCATAACATTTTCCACTGTAACAATATGGAAATGGATTACCCAATTCGTGGAGGAGGAGCTGGTGGATGCATGTCTACACCCAATTTAAAAGGTAGCTCCTTTCCCTCTGCATCATCTGTTGGTAGAGACCAAAACAATGACAACCAACATGACTTTTATGGAGCTAACAATTTCATATTCGGGGACAAGCCAAGTTTTCGGATCACAATGACTGAATCATACTTGTCTGCTATACTGAGAATACCTTCGTATTTCACCATCGAACATCTGTGTGAAATAGGGTCTTATTCCGATGTGACCTTACAAACTTCAGGTGAGAGAACTTGGACTGTTCATTGTACCATCGACAAAAGTAGGCGAAATGGAAGATTCAATGCTGCTGGTTGGAGAGCATTTGTGCAGGACAATCAATTGGAAGCAGGTGATGATTGTCTGTTCCAGTTGATAGGCGACGTAAGCTCAAAGTCTACGTATACCGAGCTAAATGAAGGCTATATCAACCTGACTCTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

287

Amino Acids

32.42

Weight (kDa)

5.91

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	40 - 120	1.3e-08	B3 DNA binding domain
B3	PF02362	185 - 272	1.6e-13	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	758
Acc36I	ACCTGC	1 cut(s)	758
AccB7I	CCANNNNNTGG	1 cut(s)	395
AccI	GTMKAC	3 cut(s)	422, 815, 821
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	117, 557
AcoI	YGGCCR	2 cut(s)	3, 212
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	2 cut(s)	688, 860
AfiI	CCNNNNNNNGG	2 cut(s)	200, 395
AgsI	TTSAA	2 cut(s)	91, 721
AluBI	AGCT	7 cut(s)	81, 143, 407, 444, 512, 807, 829
AluI	AGCT	7 cut(s)	81, 143, 407, 444, 512, 807, 829
Alw26I	GTCTC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	117, 557
Aor13HI	TCCGGA	1 cut(s)	133
AoxI	GGCC	2 cut(s)	3, 212
ApeKI	GCWGC	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	592
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	3 cut(s)	595, 674, 782
BalI	TGGCCA	2 cut(s)	5, 214
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	4 cut(s)	113, 261, 614, 698
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	758
BisI	GCNGC	1 cut(s)	726
BlsI	GCNGC	1 cut(s)	727
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	138, 192
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	404, 467
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	65
BsaAI	YACGTR	1 cut(s)	819
BsaI	GGTCTC	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 395
Bse1I	ACTGG	2 cut(s)	215, 787
BseAI	TCCGGA	1 cut(s)	133
BseGI	GGATG	2 cut(s)	272, 419
BseLI	CCNNNNNNNGG	2 cut(s)	200, 395
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	2 cut(s)	215, 787
BseRI	GAGGAG	2 cut(s)	414, 417
BseXI	GCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	767
BshFI	GGCC	2 cut(s)	5, 214
BsiSI	CCGG	2 cut(s)	65, 134
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	2 cut(s)	200, 395
BsmAI	GTCTC	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	5, 214
Bso31I	GGTCTC	1 cut(s)	468
Bsp13I	TCCGGA	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	109, 549
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	5, 214
BspCNI	CTCAG	1 cut(s)	576
BspEI	TCCGGA	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	138, 192
BspMI	ACCTGC	1 cut(s)	758
BspPI	GGATC	2 cut(s)	117, 557
BspTNI	GGTCTC	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	215, 787
BssMI	GATC	2 cut(s)	109, 549
BssNAI	GTATAC	1 cut(s)	822
Bst1107I	GTATAC	1 cut(s)	822
Bst4CI	ACNGT	3 cut(s)	276, 365, 679
Bst6I	CTCTTC	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	819
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	272, 419
BstKTI	GATC	2 cut(s)	112, 552
BstMAI	GTCTC	1 cut(s)	468
BstMBI	GATC	2 cut(s)	109, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	804
BstNSI	RCATGY	2 cut(s)	59, 421
BstSCI	CCNGG	1 cut(s)	63
BstSNI	TACGTA	1 cut(s)	819
BstV1I	GCAGC	1 cut(s)	712
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BstZ17I	GTATAC	1 cut(s)	822
BsuRI	GGCC	2 cut(s)	5, 214
BtsCI	GGATG	2 cut(s)	272, 419
BtsIMutI	CAGTG	1 cut(s)	361
BveI	ACCTGC	1 cut(s)	758
Cac8I	GCNNGC	1 cut(s)	141
Csp6I	GTAC	2 cut(s)	687, 859
CviAII	CATG	4 cut(s)	56, 210, 418, 497
CviQI	GTAC	2 cut(s)	687, 859
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	2 cut(s)	111, 551
DpnII	GATC	2 cut(s)	109, 549
DraI	TTTAAA	1 cut(s)	435
EaeI	YGGCCR	2 cut(s)	3, 212
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	819
Eco31I	GGTCTC	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	642
EcoT22I	ATGCAT	1 cut(s)	419
FaeI	CATG	4 cut(s)	59, 213, 421, 500
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	4 cut(s)	55, 209, 417, 496
FblI	GTMKAC	3 cut(s)	422, 815, 821
Fnu4HI	GCNGC	1 cut(s)	726
FokI	GGATG	2 cut(s)	279, 426
Fsp4HI	GCNGC	1 cut(s)	726
GluI	GCNGC	1 cut(s)	726
HaeIII	GGCC	2 cut(s)	5, 214
HapII	CCGG	2 cut(s)	65, 134
Hin1II	CATG	4 cut(s)	59, 213, 421, 500
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	6 cut(s)	71, 235, 249, 563, 717, 853
HpaII	CCGG	2 cut(s)	65, 134
HphI	GGTGA	3 cut(s)	595, 674, 782
Hpy166II	GTNNAC	5 cut(s)	70, 279, 423, 816, 822
Hpy188I	TCNGA	3 cut(s)	33, 549, 640
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	5 cut(s)	70, 279, 423, 816, 822
Hpy99I	CGWCG	1 cut(s)	803
HpyAV	CCTTC	5 cut(s)	70, 118, 323, 603, 830
HpyCH4III	ACNGT	3 cut(s)	276, 365, 679
HpyCH4IV	ACGT	2 cut(s)	801, 818
HpyCH4V	TGCA	3 cut(s)	417, 458, 748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	804
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	2 cut(s)	801, 818
Hsp92II	CATG	4 cut(s)	59, 213, 421, 500
Kpn2I	TCCGGA	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	109, 549
LmnI	GCTCC	5 cut(s)	33, 136, 404, 449, 509
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	2 cut(s)	404, 467
MaeII	ACGT	2 cut(s)	801, 818
MaeIII	GTNAC	5 cut(s)	12, 97, 255, 365, 643
MalI	GATC	2 cut(s)	111, 551
MboI	GATC	2 cut(s)	109, 549
MboII	GAAGA	3 cut(s)	60, 103, 726
MfeI	CAATTG	2 cut(s)	196, 758
MflI	RGATCY	1 cut(s)	109
MlsI	TGGCCA	2 cut(s)	5, 214
MluCI	AATT	6 cut(s)	160, 196, 390, 430, 517, 758
MluNI	TGGCCA	2 cut(s)	5, 214
MlyI	GAGTC	2 cut(s)	65, 847
MmeI	TCCRAC	1 cut(s)	713
MnlI	CCTC	7 cut(s)	37, 44, 141, 194, 392, 395, 463
Mox20I	TGGCCA	2 cut(s)	5, 214
Mph1103I	ATGCAT	1 cut(s)	419
MroI	TCCGGA	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	592
MscI	TGGCCA	2 cut(s)	5, 214
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	1 cut(s)	618
Msp20I	TGGCCA	2 cut(s)	5, 214
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	2 cut(s)	65, 134
MspR9I	CCNGG	1 cut(s)	65
MunI	CAATTG	2 cut(s)	196, 758
MwoI	GCNNNNNNNGC	1 cut(s)	804
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	109, 549
NlaIII	CATG	4 cut(s)	59, 213, 421, 500
NlaIV	GGNNCC	2 cut(s)	138, 192
NmuCI	GTSAC	2 cut(s)	12, 643
NsiI	ATGCAT	1 cut(s)	419
NspI	RCATGY	2 cut(s)	59, 421
PaqCI	CACCTGC	1 cut(s)	758
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	592
PfeI	GAWTC	4 cut(s)	235, 249, 563, 717
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	727
PleI	GAGTC	2 cut(s)	65, 847
PpsI	GAGTC	2 cut(s)	65, 847
Ppu21I	YACGTR	1 cut(s)	819
PspN4I	GGNNCC	2 cut(s)	138, 192
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	688, 860
RsaNI	GTAC	2 cut(s)	687, 859
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	1 cut(s)	726
Sau3AI	GATC	2 cut(s)	109, 549
SchI	GAGTC	2 cut(s)	65, 847
ScrFI	CCNGG	1 cut(s)	65
SfaNI	GCATC	2 cut(s)	404, 467
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
SnaBI	TACGTA	1 cut(s)	819
Sse9I	AATT	6 cut(s)	160, 196, 390, 430, 517, 758
SsiI	CCGC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	276, 365, 679
TaiI	ACGT	2 cut(s)	804, 821
TaqI	TCGA	2 cut(s)	609, 693
TasI	AATT	6 cut(s)	160, 196, 390, 430, 517, 758
TatI	WGTACW	1 cut(s)	858
TfiI	GAWTC	4 cut(s)	235, 249, 563, 717
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	1 cut(s)	368
TseFI	GTSAC	2 cut(s)	12, 643
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	2 cut(s)	12, 643
TspDTI	ATGAA	5 cut(s)	301, 342, 511, 671, 849
TspRI	CASTG	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	395
XceI	RCATGY	2 cut(s)	59, 421
XmiI	GTMKAC	3 cut(s)	422, 815, 821
XmnI	GAANNNNTTC	1 cut(s)	592
Zsp2I	ATGCAT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.