Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

1757126 .. 1759516

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG022200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCCACAATGTCACGCCCGATGGCTTCTCGGAGCAAGAGAGAGGGAAGAGGACATGCCTTCCCGGTGGACTCTCCAAGCTTCTGCTTGAAGATTGTTACTGCTGTGGATCTCCAAGATGGGAAGGAACTTCCAGAGCCAGCTGTAAGGAAGTATGGGAATTGTATGGCAGACTCCATATTCCTCAAGGTTCCCAATTGCGGAACATCATGGCCGGTAGAACTGAAAAAAACGATTCGTGGTAGCAGAATCTGGTTACAAAAAGGATGGGAACAGTTCACAGACTTTTACTCCATAGACCAAGATTACTTCATAGTGTTCAGCTATGAAGGCGAACATTCTCATTTCCAAGTACACATTTTCCACTGCAACAATATGGAAATGGATTACCCAATTCGTGGAGGAGGAGCTGGTGGATGCATGTCTACACCCAATTTAAAAGGTAGCTCCTTTCCCTCTGCATCATCTGCTGGTAGAGACCAAAACAATGACAACCAACATGACTTTTATGGAGCTAACAATTTCATATTCGGGGACAAGCCAAGTTTTCGGATCACAATGACTGAATCATACTTGTCAGCTATATTGGTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

198

Amino Acids

22.2

Weight (kDa)

6.58

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	40 - 121	1.2e-09	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	117, 560
AcoI	YGGCCR	2 cut(s)	3, 212
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	2 cut(s)	200, 398
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	8 cut(s)	81, 143, 324, 410, 447, 515, 581, 594
AluI	AGCT	8 cut(s)	81, 143, 324, 410, 447, 515, 581, 594
Alw26I	GTCTC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	117, 560
AlwNI	CAGNNNCTG	1 cut(s)	252
AoxI	GGCC	2 cut(s)	3, 212
AsuC2I	CCSGG	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	3 cut(s)	16, 113, 261
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	471
BfaI	CTAG	1 cut(s)	595
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	2 cut(s)	407, 470
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	471
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 398
Bse118I	RCCGGY	1 cut(s)	214
BseGI	GGATG	2 cut(s)	272, 422
BseLI	CCNNNNNNNGG	2 cut(s)	200, 398
BseRI	GAGGAG	2 cut(s)	417, 420
BshFI	GGCC	2 cut(s)	5, 214
BsiSI	CCGG	2 cut(s)	65, 215
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	2 cut(s)	200, 398
BsmAI	GTCTC	1 cut(s)	471
BsmFI	GGGAC	1 cut(s)	548
BsnI	GGCC	2 cut(s)	5, 214
Bso31I	GGTCTC	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	109, 552
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	5, 214
BspLI	GGNNCC	1 cut(s)	192
BspPI	GGATC	2 cut(s)	117, 560
BspTNI	GGTCTC	1 cut(s)	471
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssMI	GATC	2 cut(s)	109, 552
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	272, 422
BstKTI	GATC	2 cut(s)	112, 555
BstMAI	GTCTC	1 cut(s)	471
BstMBI	GATC	2 cut(s)	109, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 467
BstNSI	RCATGY	2 cut(s)	59, 424
BstSCI	CCNGG	1 cut(s)	63
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	5, 214
BtsCI	GGATG	2 cut(s)	272, 422
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	141
CaiI	CAGNNNCTG	1 cut(s)	252
Cfr10I	RCCGGY	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	4 cut(s)	56, 210, 421, 500
CviQI	GTAC	1 cut(s)	353
DpnI	GATC	2 cut(s)	111, 554
DpnII	GATC	2 cut(s)	109, 552
DraI	TTTAAA	1 cut(s)	438
EaeI	YGGCCR	2 cut(s)	3, 212
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	471
EcoT22I	ATGCAT	1 cut(s)	422
FaeI	CATG	4 cut(s)	59, 213, 424, 503
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	4 cut(s)	55, 209, 420, 499
FblI	GTMKAC	1 cut(s)	425
FokI	GGATG	2 cut(s)	279, 429
FspBI	CTAG	1 cut(s)	595
HaeIII	GGCC	2 cut(s)	5, 214
HapII	CCGG	2 cut(s)	65, 215
Hin1II	CATG	4 cut(s)	59, 213, 424, 503
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	5 cut(s)	71, 173, 235, 249, 566
HpaII	CCGG	2 cut(s)	65, 215
Hpy166II	GTNNAC	4 cut(s)	70, 279, 355, 426
Hpy188I	TCNGA	2 cut(s)	33, 552
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	4 cut(s)	70, 279, 355, 426
HpyAV	CCTTC	3 cut(s)	70, 118, 323
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	369, 420, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 467
Hsp92II	CATG	4 cut(s)	59, 213, 424, 503
Kzo9I	GATC	2 cut(s)	109, 552
LmnI	GCTCC	4 cut(s)	33, 407, 452, 512
LpnPI	CCDG	7 cut(s)	78, 147, 153, 228, 238, 396, 456
LweI	GCATC	2 cut(s)	407, 470
MaeI	CTAG	1 cut(s)	595
MaeIII	GTNAC	3 cut(s)	12, 97, 255
MalI	GATC	2 cut(s)	111, 554
MboI	GATC	2 cut(s)	109, 552
MboII	GAAGA	2 cut(s)	60, 103
MfeI	CAATTG	1 cut(s)	196
MflI	RGATCY	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	160, 196, 393, 433, 520
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	65, 167
MnlI	CCTC	6 cut(s)	37, 44, 194, 395, 398, 466
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	2 cut(s)	65, 215
MspR9I	CCNGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	330, 467
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	2 cut(s)	109, 552
NlaIII	CATG	4 cut(s)	59, 213, 424, 503
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	422
NspI	RCATGY	2 cut(s)	59, 424
PfeI	GAWTC	3 cut(s)	235, 249, 566
PflMI	CCANNNNNTGG	1 cut(s)	398
PleI	GAGTC	2 cut(s)	65, 167
PpsI	GAGTC	2 cut(s)	65, 167
PspN4I	GGNNCC	1 cut(s)	192
PstNI	CAGNNNCTG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SaqAI	TTAA	1 cut(s)	437
Sau3AI	GATC	2 cut(s)	109, 552
SchI	GAGTC	2 cut(s)	65, 167
ScrFI	CCNGG	1 cut(s)	65
SfaNI	GCATC	2 cut(s)	407, 470
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	5 cut(s)	160, 196, 393, 433, 520
SsiI	CCGC	1 cut(s)	201
SspMI	CTAG	1 cut(s)	595
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	276
TasI	AATT	5 cut(s)	160, 196, 393, 433, 520
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	3 cut(s)	235, 249, 566
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TscAI	CASTG	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	3 cut(s)	301, 342, 514
TspRI	CASTG	1 cut(s)	371
Van91I	CCANNNNNTGG	1 cut(s)	398
XceI	RCATGY	2 cut(s)	59, 424
XmiI	GTMKAC	1 cut(s)	425
XspI	CTAG	1 cut(s)	595
Zsp2I	ATGCAT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.