Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

1347312 .. 1349914

Gene Structure 2603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00278270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCTTCTTCCAGCTCCCTTGCTGGAAAGGGAAAACGACATGCCGTTCAGGAGAACTCTCCAGCCTTCTGCTTGAGGATTTTCAGTCGTGAAGATCTCAAAGACGGGAAGAAGGAACTTCCGCCGGCAGCTGTGAGGGAGTATGGACATCAAATGACAGACCATATATACCTTAAGGTTCCAAATTGTGGAAAACATTGGAAAATAGAATTGAGAACATCACCTCGTCGTGACCGAATGTGGTTAGAGAAGGGATGGGAAGAGTTTGCCTGCTTTTACTTACTAGACCAAGGCGACATGGCAACTTTCAGCTCTGAAGGCGAAAATTCCCATTTCCAAGTAAGCATCTATAGTTGGGATGATATGGAAATAGAGTACCCTATTCGCATTGGAGCGGCTGATGTCAGCACACCAGAGAGAAAAGAAATAGGAGCTGAAGCTGTAGCTATAGGCATTTCGGTTTCCCCCAGATCCTCTGCTGATGAACATGGAAGGGCTAAGGTTAGAAGACGAAGAAGGAGAGTAACAGGATCTGAAGCTGAAGCTAGAGCCATTTCAATTTCCCCAAGATCCTCTGCTGATGAACATGAATATGATGTGAGCAGTTTCAGGTCGGACAAGCCATTTCTTGATATCAGAATTCCAGCCAAAACCTTGGCCTTCCGTGTGTTTATAAATCAAGCTTTTGCCTCGGAACATTTCTATAAAGCAGACACTTGTTGTGACTTGACGCTACAGAATAATCAAGGTGACAAAGTTTGGACAATTCAGTGCTGTTCATACAAAAGAAGTAATGGAAGAATACAAGCAATAATTTCAGGTGCTGGTTGGAAAGCATTTAGGCAGGACAATTATCTGGAAGAAGGTGATGTCTGTGTCCTAGAGGTGATAGAGGAACGTAAGTGCAGAGTTTCGATATTCCGGGCTAAAAGTGAAGATAACATGAATTGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

318

Amino Acids

36.2

Weight (kDa)

7.56

Isoelectric Point (pI)

56.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	32 - 117	3.7e-10	B3 DNA binding domain
B3	PF02362	221 - 309	1.1e-12	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	674
AccB7I	CCANNNNNTGG	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	395
AciI	CCGC	2 cut(s)	122, 395
AclWI	GGATC	3 cut(s)	465, 538, 564
AcsI	RAATTY	2 cut(s)	325, 639
AcuI	CTGAAG	4 cut(s)	336, 456, 555, 561
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	558
AluBI	AGCT	9 cut(s)	15, 131, 312, 434, 440, 446, 539, 545, 683
AluI	AGCT	9 cut(s)	15, 131, 312, 434, 440, 446, 539, 545, 683
AlwI	GGATC	3 cut(s)	465, 538, 564
AlwNI	CAGNNNCTG	2 cut(s)	533, 824
AoxI	GGCC	1 cut(s)	657
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	2 cut(s)	325, 639
AsuC2I	CCSGG	1 cut(s)	923
AsuHPI	GGTGA	4 cut(s)	213, 761, 878, 898
BbsI	GAAGAC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	923
BfaI	CTAG	3 cut(s)	284, 546, 881
BfmI	CTRYAG	4 cut(s)	349, 441, 447, 734
BfrI	CTTAAG	1 cut(s)	173
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	2 cut(s)	129, 396
BlsI	GCNGC	2 cut(s)	130, 397
Bme1390I	CCNGG	1 cut(s)	923
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	923
BmsI	GCATC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	514
BpmI	CTGGAG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	923
BsaJI	CCNNGG	3 cut(s)	289, 654, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	124
BseDI	CCNNGG	3 cut(s)	289, 654, 690
BseGI	GGATG	2 cut(s)	260, 364
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	925
BshFI	GGCC	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	125, 922
BslI	CCNNNNNNNGG	1 cut(s)	188
BsnI	GGCC	1 cut(s)	659
Bsp143I	GATC	4 cut(s)	94, 470, 530, 569
BspACI	CCGC	2 cut(s)	122, 395
BspANI	GGCC	1 cut(s)	659
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	3 cut(s)	465, 538, 564
BspTI	CTTAAG	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	289, 654, 690
BssMI	GATC	4 cut(s)	94, 470, 530, 569
BssT1I	CCWWGG	2 cut(s)	289, 654
Bst6I	CTCTTC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	126, 271
BstDEI	CTNAG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	260, 364
BstKTI	GATC	4 cut(s)	97, 473, 533, 572
BstMBI	GATC	4 cut(s)	94, 470, 530, 569
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	921
BstSFI	CTRYAG	4 cut(s)	349, 441, 447, 734
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	514
BstX2I	RGATCY	4 cut(s)	94, 470, 530, 569
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstYI	RGATCY	4 cut(s)	94, 470, 530, 569
BsuRI	GGCC	1 cut(s)	659
BtsCI	GGATG	2 cut(s)	260, 364
BtsIMutI	CAGTG	1 cut(s)	776
Cac8I	GCNNGC	2 cut(s)	126, 271
CaiI	CAGNNNCTG	2 cut(s)	533, 824
Cfr10I	RCCGGY	1 cut(s)	124
CseI	GACGC	1 cut(s)	739
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	5 cut(s)	41, 298, 488, 587, 943
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	4 cut(s)	96, 472, 532, 571
DpnII	GATC	4 cut(s)	94, 470, 530, 569
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	289, 654
Eco32I	GATATC	1 cut(s)	634
Eco57I	CTGAAG	4 cut(s)	336, 456, 555, 561
EcoRI	GAATTC	1 cut(s)	639
EcoRV	GATATC	1 cut(s)	634
EcoT14I	CCWWGG	2 cut(s)	289, 654
ErhI	CCWWGG	2 cut(s)	289, 654
FaeI	CATG	5 cut(s)	44, 301, 491, 590, 946
FatI	CATG	5 cut(s)	40, 297, 487, 586, 942
Fnu4HI	GCNGC	2 cut(s)	129, 396
FokI	GGATG	2 cut(s)	267, 371
Fsp4HI	GCNGC	2 cut(s)	129, 396
FspBI	CTAG	3 cut(s)	284, 546, 881
GluI	GCNGC	2 cut(s)	129, 396
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	659
HapII	CCGG	2 cut(s)	125, 922
HgaI	GACGC	1 cut(s)	739
Hin1II	CATG	5 cut(s)	44, 301, 491, 590, 946
HindIII	AAGCTT	1 cut(s)	681
HpaII	CCGG	2 cut(s)	125, 922
HphI	GGTGA	4 cut(s)	213, 761, 878, 898
Hpy188I	TCNGA	5 cut(s)	316, 535, 616, 638, 694
Hpy188III	TCNNGA	5 cut(s)	50, 89, 230, 629, 857
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	8 cut(s)	76, 106, 244, 311, 486, 510, 670, 857
HpyCH4IV	ACGT	1 cut(s)	898
HpyCH4V	TGCA	1 cut(s)	906
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	1 cut(s)	898
Hsp92II	CATG	5 cut(s)	44, 301, 491, 590, 946
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Kzo9I	GATC	4 cut(s)	94, 470, 530, 569
LmnI	GCTCC	3 cut(s)	20, 392, 431
Lsp1109I	GCAGC	1 cut(s)	140
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	3 cut(s)	284, 546, 881
MaeII	ACGT	1 cut(s)	898
MaeIII	GTNAC	4 cut(s)	230, 523, 722, 749
MalI	GATC	4 cut(s)	96, 472, 532, 571
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	4 cut(s)	94, 470, 530, 569
MboII	GAAGA	8 cut(s)	104, 121, 272, 519, 525, 810, 872, 947
MflI	RGATCY	4 cut(s)	94, 470, 530, 569
MluCI	AATT	9 cut(s)	184, 209, 325, 558, 639, 765, 813, 850, 946
MmeI	TCCRAC	2 cut(s)	594, 809
MnlI	CCTC	8 cut(s)	69, 129, 234, 484, 583, 700, 877, 886
MroNI	GCCGGC	1 cut(s)	124
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	591
MspA1I	CMGCKG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	2 cut(s)	125, 922
MspR9I	CCNGG	1 cut(s)	923
MwoI	GCNNNNNNNGC	1 cut(s)	318
NaeI	GCCGGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	923
NdeII	GATC	4 cut(s)	94, 470, 530, 569
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	5 cut(s)	44, 301, 491, 590, 946
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	3 cut(s)	230, 722, 749
NspI	RCATGY	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PdiI	GCCGGC	1 cut(s)	126
PflMI	CCANNNNNTGG	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	130, 397
PsiI	TTATAA	1 cut(s)	674
PspN4I	GGNNCC	1 cut(s)	180
PstNI	CAGNNNCTG	2 cut(s)	533, 824
PsuI	RGATCY	4 cut(s)	94, 470, 530, 569
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	591
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	2 cut(s)	129, 396
Sau3AI	GATC	4 cut(s)	94, 470, 530, 569
ScrFI	CCNGG	1 cut(s)	923
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	4 cut(s)	349, 441, 447, 734
SmiMI	CAYNNNNRTG	1 cut(s)	591
SmlI	CTYRAG	2 cut(s)	73, 173
SmoI	CTYRAG	2 cut(s)	73, 173
Sse9I	AATT	9 cut(s)	184, 209, 325, 558, 639, 765, 813, 850, 946
SsiI	CCGC	2 cut(s)	122, 395
SspMI	CTAG	3 cut(s)	284, 546, 881
StyD4I	CCNGG	1 cut(s)	921
StyI	CCWWGG	2 cut(s)	289, 654
TaiI	ACGT	1 cut(s)	901
TaqI	TCGA	1 cut(s)	914
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	9 cut(s)	184, 209, 325, 558, 639, 765, 813, 850, 946
TauI	GCSGC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	776
TseFI	GTSAC	3 cut(s)	230, 722, 749
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	3 cut(s)	230, 722, 749
TspDTI	ATGAA	5 cut(s)	498, 597, 603, 768, 942
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	1 cut(s)	776
Van91I	CCANNNNNTGG	1 cut(s)	188
Vha464I	CTTAAG	1 cut(s)	173
XapI	RAATTY	2 cut(s)	325, 639
XceI	RCATGY	1 cut(s)	44
XspI	CTAG	3 cut(s)	284, 546, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.