Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

3503719 .. 3506487

Gene Structure 2769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG051100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGAAGGAAAACAGTCCCATTTCCAAGTACGCATTTTTCATTGGAAATGCATGGAAATGGATTACCCTATTCGTAGACGAGGTACATTCTCACGTGCAATGGCTTTTTCCGGCAAGAGAGATGCAAAAGGTTCCAGAGGACTATCCAAGCTTCTTCTTAAACATTGTTACTGATGACGATCTCCTAGATGGGAAGGAACTTCCAGAGCCAGCTGTGAGGAAGTACAGAAATTGCATGGCAGATCATATATTCCTCGAGGTTCCAAACTGCGAAAAACCATGGATATTGAAATTGAGAAGATCAGCTTGTGGTGGCCGAATGTGGTTAAGCAAGGGATGGCAAGAGTTTGCCAACTTTTACTCACTAGATGAAGGCTACTTAGCAGTGTTCAGCTATGAAGGCGAACATTCTCATTTCCAAGTACGTGTTTTTCAGTGGAATGATATGGAATTAGATTACCCTATTCATGGAGGAGGAGTTGATGGCAGACCAAAAAGGAAAAAAACAGGAGCTAATCAAGACATGCCTCCTGCTCATTTAGAAACTAGAGCCGCTTCAATTTCCTCCGGATCCTCAGCTGATGAACACCAAAACTATCTTACTGCAACTGCCAGTTTCAAATCTAACAAGCCATTTTTTATGCTTAACATCTGTGCTTCATACATACAACTCGGTTTCGCGCACATAAATCGATCTTTTGCCAAGGAACATCTCTGTAGACCAGGCACTTCTTGCGATGTGACCCTGCAGATTTCAGGTGAGAGAGTTTGGACTGCTGTGTGCACTGCCACCGAACATAGAGATCAGAAAATATATACTAGAATTTCAGGTGCTGGATGGAAAGCATTTCAGCAGGACAATCATCTGGTAAAAGGTAATATCTGTGTGTTCGAGTTGATAGAGGAGCGTACATTCAAAGTTTCCATATTCCGAACTAAAGTGAAGATTAATAGGCAAACTGAGGAAAAGGATATGGAAATAGATTACCCTATTCATGGAGGAGGAATTGATGTAACACCAAAAGGGAAAAAGCCAGGAGCTAATCAAGATGTGCCTCCTGCCCACTTAGAAGCTAGAGCCAATTCAGTTTCTTCTGGATCCTCAGCTGATGAAGACCAAAATAATCTTCTCACAACTACTAGTTTCAAATCTGACAAGCCAATTTTTATGCTCAATATGACAGCTACATACATGCGCCTCTCTCTTGCGCACATAAGTGCATCATTTGCTGCTGAACATCTATGCAAACCAGGCATTTCTTGCAATGTGATCCTACAGAATTCAGAGGAGAGAGTTTGGACTGCTCAGTGTTTTGTCAGTGAACACAGCGATCACCGAGTGCAAGCAAGTCTCTCAGGGCCTGGTTGGAAAGCATTTAAGCAGGACAATCATCTGGTATTAGGTGATGTCTGTGTTTTTGAGTTGATAGATGAACGTAAACTAAAAGTTTCCATATTCCAAGGTAAAGTGAAGATTATTAGGCAAAATGAGGAAAATGAAGCCAGGCACATTTCTCAGTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

508

Amino Acids

57.72

Weight (kDa)

6.58

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	65 - 144	3e-08	B3 DNA binding domain
B3	PF02362	219 - 312	2.8e-11	B3 DNA binding domain
B3	PF02362	394 - 487	1.6e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	254
Acc16I	TGCGCA	1 cut(s)	1209
AccI	GTMKAC	2 cut(s)	75, 718
AccII	CGCG	1 cut(s)	680
AccIII	TCCGGA	1 cut(s)	566
AciI	CCGC	1 cut(s)	552
AclWI	GGATC	5 cut(s)	564, 577, 1092, 1105, 1264
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	822, 1279
AcvI	CACGTG	1 cut(s)	94
AdeI	CACNNNGTG	1 cut(s)	1339
AfaI	GTAC	5 cut(s)	29, 84, 224, 423, 910
AfiI	CCNNNNNNNGG	2 cut(s)	467, 995
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	5 cut(s)	289, 558, 619, 916, 1147
AhlI	ACTAGT	1 cut(s)	1139
AjnI	CCWGG	5 cut(s)	721, 1033, 1249, 1360, 1502
AjuI	GAANNNNNNNTTGG	2 cut(s)	1110, 1142
AleI	CACNNNNGTG	1 cut(s)	1215
Alw21I	GWGCWC	1 cut(s)	785
Alw26I	GTCTC	1 cut(s)	1355
Alw44I	GTGCAC	1 cut(s)	781
AlwI	GGATC	5 cut(s)	564, 577, 1092, 1105, 1264
AlwNI	CAGNNNCTG	2 cut(s)	833, 1361
Ama87I	CYCGRG	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	566
AoxI	GGCC	2 cut(s)	313, 1358
ApaLI	GTGCAC	1 cut(s)	781
ApeKI	GCWGC	1 cut(s)	1229
ApoI	RAATTY	2 cut(s)	822, 1279
AseI	ATTAAT	1 cut(s)	948
AspLEI	GCGC	3 cut(s)	682, 1197, 1210
AspS9I	GGNCC	1 cut(s)	1358
AsuHPI	GGTGA	3 cut(s)	770, 1325, 1415
AvaI	CYCGRG	1 cut(s)	254
BaeGI	GKGCMC	1 cut(s)	785
BamHI	GGATCC	2 cut(s)	569, 1097
BbrPI	CACGTG	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	1119
Bbv12I	GWGCWC	1 cut(s)	785
BbvCI	CCTCAGC	2 cut(s)	574, 1102
BbvI	GCAGC	1 cut(s)	1216
BccI	CCATC	4 cut(s)	182, 330, 476, 831
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	5 cut(s)	723, 1035, 1251, 1362, 1504
BcoDI	GTCTC	1 cut(s)	1355
BcuI	ACTAGT	1 cut(s)	1139
BfaI	CTAG	6 cut(s)	185, 365, 546, 819, 1074, 1140
BfmI	CTRYAG	3 cut(s)	715, 746, 1274
BisI	GCNGC	2 cut(s)	552, 1230
BlsI	GCNGC	2 cut(s)	553, 1231
Bme1390I	CCNGG	5 cut(s)	723, 1035, 1251, 1362, 1504
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	1358
BmiI	GGNNCC	4 cut(s)	132, 261, 571, 1099
BmrFI	CCNGG	5 cut(s)	723, 1035, 1251, 1362, 1504
BmsI	GCATC	2 cut(s)	111, 1229
BpiI	GAAGAC	1 cut(s)	1119
Bpu10I	CCTNAGC	2 cut(s)	574, 1102
Bsa29I	ATCGAT	1 cut(s)	691
BsaAI	YACGTR	2 cut(s)	94, 425
BsaBI	GATNNNNATC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	278, 702, 1459
BsaWI	WCCGGW	1 cut(s)	566
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 995
Bse1I	ACTGG	1 cut(s)	612
Bse3DI	GCAATG	2 cut(s)	104, 1270
Bse8I	GATNNNNATC	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	566
BseBI	CCWGG	5 cut(s)	723, 1035, 1251, 1362, 1504
BseCI	ATCGAT	1 cut(s)	691
BseDI	CCNNGG	3 cut(s)	278, 702, 1459
BseGI	GGATG	2 cut(s)	341, 842
BseJI	GATNNNNATC	1 cut(s)	177
BseLI	CCNNNNNNNGG	2 cut(s)	467, 995
BseMI	GCAATG	2 cut(s)	104, 1270
BseMII	CTCAG	5 cut(s)	588, 951, 1116, 1319, 1368
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	5 cut(s)	486, 489, 917, 1014, 1301
BseSI	GKGCMC	1 cut(s)	785
BseXI	GCAGC	1 cut(s)	1216
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	2 cut(s)	315, 1360
BshVI	ATCGAT	1 cut(s)	691
BsiHKAI	GWGCWC	1 cut(s)	785
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	110, 567
BslI	CCNNNNNNNGG	2 cut(s)	467, 995
BsmAI	GTCTC	1 cut(s)	1355
BsnI	GGCC	2 cut(s)	315, 1360
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	785
Bsp13I	TCCGGA	1 cut(s)	566
Bsp143I	GATC	9 cut(s)	178, 241, 299, 569, 692, 802, 1097, 1269, 1330
Bsp19I	CCATGG	1 cut(s)	278
BspACI	CCGC	1 cut(s)	552
BspANI	GGCC	2 cut(s)	315, 1360
BspCNI	CTCAG	5 cut(s)	587, 952, 1115, 1318, 1367
BspDI	ATCGAT	1 cut(s)	691
BspEI	TCCGGA	1 cut(s)	566
BspFNI	CGCG	1 cut(s)	680
BspLI	GGNNCC	4 cut(s)	132, 261, 571, 1099
BspMAI	CTGCAG	1 cut(s)	750
BspPI	GGATC	5 cut(s)	564, 577, 1092, 1105, 1264
BsrDI	GCAATG	2 cut(s)	104, 1270
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	3 cut(s)	278, 702, 1459
BssMI	GATC	9 cut(s)	178, 241, 299, 569, 692, 802, 1097, 1269, 1330
BssT1I	CCWWGG	3 cut(s)	278, 702, 1459
Bst2UI	CCWGG	5 cut(s)	723, 1035, 1251, 1362, 1504
Bst4CI	ACNGT	1 cut(s)	14
BstAPI	GCANNNNNTGC	3 cut(s)	732, 1226, 1260
BstBAI	YACGTR	2 cut(s)	94, 425
BstC8I	GCNNGC	2 cut(s)	210, 1344
BstDEI	CTNAG	8 cut(s)	379, 574, 960, 1066, 1102, 1305, 1354, 1515
BstDSI	CCRYGG	1 cut(s)	278
BstF5I	GGATG	2 cut(s)	341, 842
BstFNI	CGCG	1 cut(s)	680
BstHHI	GCGC	3 cut(s)	682, 1197, 1210
BstKTI	GATC	9 cut(s)	181, 244, 302, 572, 695, 805, 1100, 1272, 1333
BstMAI	GTCTC	1 cut(s)	1355
BstMBI	GATC	9 cut(s)	178, 241, 299, 569, 692, 802, 1097, 1269, 1330
BstMWI	GCNNNNNNNGC	5 cut(s)	399, 732, 1226, 1251, 1260
BstNI	CCWGG	5 cut(s)	723, 1035, 1251, 1362, 1504
BstNSI	RCATGY	2 cut(s)	526, 1195
BstSCI	CCNGG	5 cut(s)	721, 1033, 1249, 1360, 1502
BstSFI	CTRYAG	3 cut(s)	715, 746, 1274
BstSLI	GKGCMC	1 cut(s)	785
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	1 cut(s)	1216
BstV2I	GAAGAC	1 cut(s)	1119
BstX2I	RGATCY	2 cut(s)	569, 1097
BstYI	RGATCY	2 cut(s)	569, 1097
Bsu15I	ATCGAT	1 cut(s)	691
BsuRI	GGCC	2 cut(s)	315, 1360
BsuTUI	ATCGAT	1 cut(s)	691
BtgI	CCRYGG	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	750
BtsCI	GGATG	2 cut(s)	341, 842
BtsI	GCAGTG	2 cut(s)	390, 783
BtsIMutI	CAGTG	5 cut(s)	390, 440, 783, 1313, 1324
Cac8I	GCNNGC	2 cut(s)	210, 1344
CaiI	CAGNNNCTG	2 cut(s)	833, 1361
CfoI	GCGC	3 cut(s)	682, 1197, 1210
Cfr13I	GGNCC	1 cut(s)	1358
ClaI	ATCGAT	1 cut(s)	691
Csp6I	GTAC	5 cut(s)	28, 83, 223, 422, 909
CviAII	CATG	7 cut(s)	51, 235, 279, 467, 523, 995, 1192
CviQI	GTAC	5 cut(s)	28, 83, 223, 422, 909
DdeI	CTNAG	8 cut(s)	379, 574, 960, 1066, 1102, 1305, 1354, 1515
DpnI	GATC	9 cut(s)	180, 243, 301, 571, 694, 804, 1099, 1271, 1332
DpnII	GATC	9 cut(s)	178, 241, 299, 569, 692, 802, 1097, 1269, 1330
DraIII	CACNNNGTG	1 cut(s)	1339
EaeI	YGGCCR	1 cut(s)	313
Eco130I	CCWWGG	3 cut(s)	278, 702, 1459
Eco72I	CACGTG	1 cut(s)	94
Eco88I	CYCGRG	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	1358
EcoRI	GAATTC	1 cut(s)	1279
EcoRII	CCWGG	5 cut(s)	721, 1033, 1249, 1360, 1502
EcoT14I	CCWWGG	3 cut(s)	278, 702, 1459
EcoT22I	ATGCAT	1 cut(s)	52
ErhI	CCWWGG	3 cut(s)	278, 702, 1459
FaeI	CATG	7 cut(s)	54, 238, 282, 470, 526, 998, 1195
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FatI	CATG	7 cut(s)	50, 234, 278, 466, 522, 994, 1191
FblI	GTMKAC	2 cut(s)	75, 718
Fnu4HI	GCNGC	2 cut(s)	552, 1230
FokI	GGATG	2 cut(s)	348, 849
Fsp4HI	GCNGC	2 cut(s)	552, 1230
FspBI	CTAG	6 cut(s)	185, 365, 546, 819, 1074, 1140
FspI	TGCGCA	1 cut(s)	1209
GlaI	GCGC	3 cut(s)	681, 1196, 1209
GluI	GCNGC	2 cut(s)	552, 1230
HaeIII	GGCC	2 cut(s)	315, 1360
HapII	CCGG	2 cut(s)	110, 567
HhaI	GCGC	3 cut(s)	682, 1197, 1210
Hin1II	CATG	7 cut(s)	54, 238, 282, 470, 526, 998, 1195
Hin6I	GCGC	3 cut(s)	680, 1195, 1208
HinP1I	GCGC	3 cut(s)	680, 1195, 1208
HindIII	AAGCTT	1 cut(s)	148
HpaII	CCGG	2 cut(s)	110, 567
HphI	GGTGA	3 cut(s)	770, 1325, 1415
Hpy166II	GTNNAC	5 cut(s)	76, 719, 783, 1322, 1439
Hpy188I	TCNGA	4 cut(s)	807, 932, 1153, 1285
Hpy188III	TCNNGA	6 cut(s)	134, 203, 518, 567, 1046, 1095
Hpy8I	GTNNAC	5 cut(s)	76, 719, 783, 1322, 1439
HpyAV	CCTTC	3 cut(s)	187, 365, 392
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	3 cut(s)	93, 424, 1435
HpyF10VI	GCNNNNNNNGC	5 cut(s)	399, 732, 1226, 1251, 1260
HpyF3I	CTNAG	8 cut(s)	379, 574, 960, 1066, 1102, 1305, 1354, 1515
HpySE526I	ACGT	3 cut(s)	93, 424, 1435
Hsp92II	CATG	7 cut(s)	54, 238, 282, 470, 526, 998, 1195
HspAI	GCGC	3 cut(s)	680, 1195, 1208
Kpn2I	TCCGGA	1 cut(s)	566
Kzo9I	GATC	9 cut(s)	178, 241, 299, 569, 692, 802, 1097, 1269, 1330
LmnI	GCTCC	3 cut(s)	509, 904, 1037
Lsp1109I	GCAGC	1 cut(s)	1216
LweI	GCATC	2 cut(s)	111, 1229
MaeI	CTAG	6 cut(s)	185, 365, 546, 819, 1074, 1140
MaeII	ACGT	3 cut(s)	93, 424, 1435
MaeIII	GTNAC	3 cut(s)	166, 739, 1012
MalI	GATC	9 cut(s)	180, 243, 301, 571, 694, 804, 1099, 1271, 1332
MboI	GATC	9 cut(s)	178, 241, 299, 569, 692, 802, 1097, 1269, 1330
MboII	GAAGA	7 cut(s)	145, 309, 955, 1083, 1118, 1124, 1483
MflI	RGATCY	2 cut(s)	569, 1097
MhlI	GDGCHC	1 cut(s)	785
MluCI	AATT	9 cut(s)	229, 290, 449, 558, 822, 1005, 1081, 1161, 1279
MmeI	TCCRAC	1 cut(s)	1346
Mph1103I	ATGCAT	1 cut(s)	52
MroI	TCCGGA	1 cut(s)	566
MseI	TTAA	5 cut(s)	158, 326, 645, 948, 1377
MslI	CAYNNNNRTG	2 cut(s)	55, 1215
MspA1I	CMGCKG	3 cut(s)	212, 578, 1106
MspI	CCGG	2 cut(s)	110, 567
MspR9I	CCNGG	5 cut(s)	723, 1035, 1251, 1362, 1504
MvaI	CCWGG	5 cut(s)	723, 1035, 1251, 1362, 1504
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	5 cut(s)	399, 732, 1226, 1251, 1260
NcoI	CCATGG	1 cut(s)	278
NdeII	GATC	9 cut(s)	178, 241, 299, 569, 692, 802, 1097, 1269, 1330
NlaIII	CATG	7 cut(s)	54, 238, 282, 470, 526, 998, 1195
NlaIV	GGNNCC	4 cut(s)	132, 261, 571, 1099
NmuCI	GTSAC	1 cut(s)	739
NsbI	TGCGCA	1 cut(s)	1209
NsiI	ATGCAT	1 cut(s)	52
NspI	RCATGY	2 cut(s)	526, 1195
OliI	CACNNNNGTG	1 cut(s)	1215
PaeR7I	CTCGAG	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	553, 1231
PmaCI	CACGTG	1 cut(s)	94
PmlI	CACGTG	1 cut(s)	94
Ppu21I	YACGTR	2 cut(s)	94, 425
PshBI	ATTAAT	1 cut(s)	948
Psp6I	CCWGG	5 cut(s)	721, 1033, 1249, 1360, 1502
PspCI	CACGTG	1 cut(s)	94
PspGI	CCWGG	5 cut(s)	721, 1033, 1249, 1360, 1502
PspN4I	GGNNCC	4 cut(s)	132, 261, 571, 1099
PspPI	GGNCC	1 cut(s)	1358
PspXI	VCTCGAGB	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	750
PstNI	CAGNNNCTG	2 cut(s)	833, 1361
PsuI	RGATCY	2 cut(s)	569, 1097
PvuII	CAGCTG	3 cut(s)	212, 578, 1106
RsaI	GTAC	5 cut(s)	29, 84, 224, 423, 910
RsaNI	GTAC	5 cut(s)	28, 83, 223, 422, 909
RseI	CAYNNNNRTG	2 cut(s)	55, 1215
SaqAI	TTAA	5 cut(s)	158, 326, 645, 948, 1377
SatI	GCNGC	2 cut(s)	552, 1230
Sau3AI	GATC	9 cut(s)	178, 241, 299, 569, 692, 802, 1097, 1269, 1330
Sau96I	GGNCC	1 cut(s)	1358
ScrFI	CCNGG	5 cut(s)	723, 1035, 1251, 1362, 1504
SduI	GDGCHC	1 cut(s)	785
SfaNI	GCATC	2 cut(s)	111, 1229
SfcI	CTRYAG	3 cut(s)	715, 746, 1274
Sfr274I	CTCGAG	1 cut(s)	254
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	55, 1215
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SpeI	ACTAGT	1 cut(s)	1139
Sse9I	AATT	9 cut(s)	229, 290, 449, 558, 822, 1005, 1081, 1161, 1279
SsiI	CCGC	1 cut(s)	552
SspMI	CTAG	6 cut(s)	185, 365, 546, 819, 1074, 1140
StyD4I	CCNGG	5 cut(s)	721, 1033, 1249, 1360, 1502
StyI	CCWWGG	3 cut(s)	278, 702, 1459
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	3 cut(s)	96, 427, 1438
TaqI	TCGA	3 cut(s)	255, 691, 891
TasI	AATT	9 cut(s)	229, 290, 449, 558, 822, 1005, 1081, 1161, 1279
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	554
Tru1I	TTAA	5 cut(s)	158, 326, 645, 948, 1377
Tru9I	TTAA	5 cut(s)	158, 326, 645, 948, 1377
TscAI	CASTG	5 cut(s)	390, 440, 790, 1313, 1324
TseFI	GTSAC	1 cut(s)	739
TseI	GCWGC	1 cut(s)	1229
Tsp45I	GTSAC	1 cut(s)	739
TspRI	CASTG	5 cut(s)	390, 440, 790, 1313, 1324
VneI	GTGCAC	1 cut(s)	781
VspI	ATTAAT	1 cut(s)	948
XapI	RAATTY	2 cut(s)	822, 1279
XceI	RCATGY	2 cut(s)	526, 1195
XhoI	CTCGAG	1 cut(s)	254
XmiI	GTMKAC	2 cut(s)	75, 718
XspI	CTAG	6 cut(s)	185, 365, 546, 819, 1074, 1140
Zsp2I	ATGCAT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.