Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000407

Physical Location & Seq

Genomic Coordinates Reverse (-)

3700356 .. 3701259

Gene Structure 904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16278

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCCTAATGCTTATTTAAAAGCAGCTAGAGCCATTTCAAATTCCTCCGGATCCTCGGGTAATGAACACCAGAATGTTCTTTCCACAGCTAACAGTTTCAAATCTGACAAGCCATTCATTATGATCAAAATGACAGCTTATTACTTGCGTAGAGAAATGTTTATAAGTGCATCTTTTGCCACAAAACATCTCTGTCGAGCAGGCGCTTCTTGTGACTTGTCCCTACAGACTCCAGATATGAGAACTTGGATTGCTGATTTGATTGTGTATGAAACCACTGAGTCAAGAGTATTTGCAAAGATTAAAGGTGCTGGTTGGAAAGCATTTAAGGAGGAAAATCATCTCGAAGAAGGTGATGTCTGTGTGCTTGAGTTGATAGAGGAATGTAAATTCAGAGTTTCATATTCCGAGCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

139

Amino Acids

15.69

Weight (kDa)

6.31

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	42 - 134	2.1e-11	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000407)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29511 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_5g16850 FvH4_6g40050 FvH4_7g32411 FvH4_7g32411 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32412 FvH4_7g32750
rosa_chinensis	RchiOBHm_Chr1g0382001 RchiOBHm_Chr1g0382011 RchiOBHm_Chr7g0179221 RchiOBHm_Chr7g0182451 RchiOBHm_Chr7g0182461 RchiOBHm_Chr7g0182471 RchiOBHm_Chr7g0182511 RchiOBHm_Chr7g0211791
rosa_laevigata	RLG00000002969 RLG00000005122 RLG00000005123 RLG00000026188 RLG00000026193 RLG00000026194
rosa_multiflora	Rmu_co8485709.1_g000001 Rmu_sc0000110.1_g000003 Rmu_sc0006047.1_g000007 Rmu_sc0006047.1_g000011 Rmu_sc0006047.1_g000015 Rmu_sc0006047.1_g000016 Rmu_sc0007448.1_g000001 Rmu_sc0009005.1_g000015 Rmu_sc0009991.1_g000003 Rmu_sc0016160.1_g000004 Rmu_sc0030974.1_g000004 Rmu_sc0030974.1_g000005 Rmu_sc0034215.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247430 Rroxscaffold_3G00271240 Rroxscaffold_3G00271250 Rroxscaffold_3G00274210 Rroxscaffold_4G00278270
rosa_rugosa	Rorug01G0432800 Rorug01G0432900 Rorug01G0432900 Rorug01G0432900 Rorug01G0433000 Rorug06G0422300 Rorug06G0422400 Rorug06G0447800 Rorug06G0447900 Rorug06G0448000 Rorug07G0128700
rosa_samantha	Rh1AG456100 Rh1AG456200 Rh1AG456500 Rh1AG457000 Rh1AG457600 Rh1AG457700 Rh1BG413200 Rh1CG428100 Rh1CG428200 Rh1DG445500 Rh2DG673100 Rh7AG021600 Rh7AG051100 Rh7AG051200 Rh7AG051300 Rh7AG051600 Rh7AG261400 Rh7BG021600 Rh7BG050700 Rh7BG050800 Rh7BG255000 Rh7CG022800 Rh7CG052200 Rh7CG052300 Rh7CG052400 Rh7CG052500 Rh7CG278000 Rh7DG022200 Rh7DG050000 Rh7DG050100 Rh7DG050200 Rh7DG050600 Rh7DG050700 Rh7DG268000
rosa_wichuraiana	Rw1G041300 Rw1G041310 Rw1G041540 Rw1G041550 Rw7G001780 Rw7G004150 Rw7G004160 Rw7G004170 Rw7G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AccIII	TCCGGA	1 cut(s)	47
AclWI	GGATC	2 cut(s)	45, 58
AcsI	RAATTY	2 cut(s)	40, 389
AgsI	TTSAA	2 cut(s)	39, 100
AluBI	AGCT	3 cut(s)	26, 89, 137
AluI	AGCT	3 cut(s)	26, 89, 137
AlwI	GGATC	2 cut(s)	45, 58
Ama87I	CYCGRG	1 cut(s)	55
Aor13HI	TCCGGA	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	2 cut(s)	40, 389
AspLEI	GCGC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	55
BamHI	GGATCC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	123
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	224
BfoI	RGCGCY	1 cut(s)	207
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmeT110I	CYCGRG	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	52
BmsI	GCATC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	47
BseAI	TCCGGA	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	205
BsoBI	CYCGRG	1 cut(s)	55
Bsp13I	TCCGGA	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	50, 123
BspCNI	CTCAG	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	2 cut(s)	45, 58
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	50, 123
Bst4CI	ACNGT	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	2 cut(s)	53, 126
BstMBI	GATC	2 cut(s)	50, 123
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 176
BstSFI	CTRYAG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BtsIMutI	CAGTG	1 cut(s)	276
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	206
CviJI	RGCY	5 cut(s)	26, 32, 89, 112, 137
CviKI_1	RGCY	5 cut(s)	26, 32, 89, 112, 137
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	52, 125
DpnII	GATC	2 cut(s)	50, 123
DraI	TTTAAA	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	55
FaiI	YATR	5 cut(s)	122, 164, 239, 270, 403
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FaqI	GGGAC	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	24
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	207
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HinfI	GANTC	2 cut(s)	229, 281
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	365
Hpy188I	TCNGA	3 cut(s)	106, 395, 409
Hpy188III	TCNNGA	4 cut(s)	48, 233, 285, 344
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	2 cut(s)	170, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 176
HpyF3I	CTNAG	1 cut(s)	279
HspAI	GCGC	1 cut(s)	204
Kpn2I	TCCGGA	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	50, 123
LpnPI	CCDG	5 cut(s)	61, 83, 186, 246, 297
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	52, 125
MboI	GATC	2 cut(s)	50, 123
MboII	GAAGA	1 cut(s)	359
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	2 cut(s)	40, 389
MlyI	GAGTC	2 cut(s)	223, 290
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	4 cut(s)	55, 64, 325, 373
MroI	TCCGGA	1 cut(s)	47
MseI	TTAA	3 cut(s)	17, 303, 327
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	29, 176
NdeII	GATC	2 cut(s)	50, 123
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	2 cut(s)	223, 289
PpsI	GAGTC	2 cut(s)	223, 289
PsiI	TTATAA	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	17, 303, 327
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	2 cut(s)	50, 123
SchI	GAGTC	2 cut(s)	223, 290
SetI	ASST	5 cut(s)	28, 91, 139, 310, 355
SfaNI	GCATC	1 cut(s)	179
SfcI	CTRYAG	1 cut(s)	224
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	40, 389
SspMI	CTAG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	2 cut(s)	196, 345
TasI	AATT	2 cut(s)	40, 389
Tru1I	TTAA	3 cut(s)	17, 303, 327
Tru9I	TTAA	3 cut(s)	17, 303, 327
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	4 cut(s)	78, 106, 285, 390
TspRI	CASTG	1 cut(s)	283
XapI	RAATTY	2 cut(s)	40, 389
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.